Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.37■□□□□ 0.05
FOXA1P55317 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
FOXA1P55317 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
FOXA1P55317 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA1P55317 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
FOXA1P55317 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.36■□□□□ 0.05
FOXA1P55317 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.36■□□□□ 0.05
FOXA1P55317 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.36■□□□□ 0.05
FOXA1P55317 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.36■□□□□ 0.05
FOXA1P55317 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 AGAP7P-201ENST00000582299 2062 ntBASIC15.36■□□□□ 0.05
FOXA1P55317 AGAP14-201ENST00000624701 2060 ntBASIC15.36■□□□□ 0.05
FOXA1P55317 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
FOXA1P55317 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
FOXA1P55317 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.36■□□□□ 0.05
FOXA1P55317 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.36■□□□□ 0.05
FOXA1P55317 PHKG1P2-201ENST00000457537 863 ntBASIC15.36■□□□□ 0.05
FOXA1P55317 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
FOXA1P55317 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.36■□□□□ 0.05
FOXA1P55317 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.36■□□□□ 0.05
FOXA1P55317 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.36■□□□□ 0.05
FOXA1P55317 HNRNPUP1-201ENST00000554987 333 ntBASIC15.36■□□□□ 0.05
FOXA1P55317 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 AC097359.3-201ENST00000603982 1210 ntBASIC15.36■□□□□ 0.05
FOXA1P55317 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.36■□□□□ 0.05
FOXA1P55317 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.36■□□□□ 0.05
FOXA1P55317 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.36■□□□□ 0.05
FOXA1P55317 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
FOXA1P55317 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
FOXA1P55317 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.36■□□□□ 0.05
FOXA1P55317 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA1P55317 AC099063.4-201ENST00000641099 1602 ntBASIC15.35■□□□□ 0.05
FOXA1P55317 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
FOXA1P55317 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 LINC00528-201ENST00000600723 2160 ntBASIC15.35■□□□□ 0.05
FOXA1P55317 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
FOXA1P55317 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.35■□□□□ 0.05
FOXA1P55317 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 UXT-AS1-201ENST00000590504 1525 ntBASIC15.35■□□□□ 0.05
FOXA1P55317 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.35■□□□□ 0.05
FOXA1P55317 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.35■□□□□ 0.05
FOXA1P55317 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.35■□□□□ 0.05
FOXA1P55317 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.35■□□□□ 0.05
FOXA1P55317 IGHV3-62-201ENST00000520057 340 ntBASIC15.35■□□□□ 0.05
FOXA1P55317 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.35■□□□□ 0.05
FOXA1P55317 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 AC040169.1-201ENST00000565382 521 ntBASIC15.35■□□□□ 0.05
FOXA1P55317 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.35■□□□□ 0.05
FOXA1P55317 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.35■□□□□ 0.05
FOXA1P55317 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.35■□□□□ 0.05
FOXA1P55317 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
FOXA1P55317 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
FOXA1P55317 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.35■□□□□ 0.05
FOXA1P55317 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA1P55317 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA1P55317 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms