Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.76■□□□□ 0.27
CHRNA3P32297 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.76■□□□□ 0.27
CHRNA3P32297 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.76■□□□□ 0.27
CHRNA3P32297 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.76■□□□□ 0.27
CHRNA3P32297 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.76■□□□□ 0.27
CHRNA3P32297 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.76■□□□□ 0.27
CHRNA3P32297 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.76■□□□□ 0.27
CHRNA3P32297 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.76■□□□□ 0.27
CHRNA3P32297 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.76■□□□□ 0.27
CHRNA3P32297 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.76■□□□□ 0.27
CHRNA3P32297 AC106028.4-201ENST00000614509 607 ntBASIC16.76■□□□□ 0.27
CHRNA3P32297 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CHRNA3P32297 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
CHRNA3P32297 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.76■□□□□ 0.27
CHRNA3P32297 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.76■□□□□ 0.27
CHRNA3P32297 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.76■□□□□ 0.27
CHRNA3P32297 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHRNA3P32297 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CHRNA3P32297 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.76■□□□□ 0.27
CHRNA3P32297 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CHRNA3P32297 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.75■□□□□ 0.27
CHRNA3P32297 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 FAM45BP-202ENST00000592932 1624 ntBASIC16.75■□□□□ 0.27
CHRNA3P32297 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.75■□□□□ 0.27
CHRNA3P32297 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CHRNA3P32297 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CHRNA3P32297 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 MIR346-201ENST00000362234 95 ntBASIC16.75■□□□□ 0.27
CHRNA3P32297 GPS2P2-201ENST00000430745 888 ntBASIC16.75■□□□□ 0.27
CHRNA3P32297 RBPMS2P1-201ENST00000437762 623 ntBASIC16.75■□□□□ 0.27
CHRNA3P32297 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CHRNA3P32297 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.75■□□□□ 0.27
CHRNA3P32297 CYMP-203ENST00000474680 1263 ntBASIC16.75■□□□□ 0.27
CHRNA3P32297 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
CHRNA3P32297 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.75■□□□□ 0.27
CHRNA3P32297 SLC25A39P2-201ENST00000537614 270 ntBASIC16.75■□□□□ 0.27
CHRNA3P32297 AP000842.3-202ENST00000569238 1080 ntBASIC16.75■□□□□ 0.27
CHRNA3P32297 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.75■□□□□ 0.27
CHRNA3P32297 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.75■□□□□ 0.27
CHRNA3P32297 MIR4321-201ENST00000592276 80 ntBASIC16.75■□□□□ 0.27
CHRNA3P32297 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.75■□□□□ 0.27
CHRNA3P32297 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.75■□□□□ 0.27
CHRNA3P32297 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.75■□□□□ 0.27
CHRNA3P32297 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 AP002414.2-201ENST00000591780 3365 ntBASIC16.75■□□□□ 0.27
CHRNA3P32297 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.75■□□□□ 0.27
CHRNA3P32297 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.75■□□□□ 0.27
CHRNA3P32297 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHRNA3P32297 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHRNA3P32297 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms