Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 AP001527.2-201ENST00000614441 631 ntBASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMC1BQ8NDV3 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
SMC1BQ8NDV3 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SMC1BQ8NDV3 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.64■□□□□ 0.58
SMC1BQ8NDV3 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
SMC1BQ8NDV3 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SMC1BQ8NDV3 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 AC025271.4-201ENST00000621477 1726 ntBASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 TPM3P8-201ENST00000330554 643 ntBASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SMC1BQ8NDV3 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 AC006335.1-201ENST00000445200 547 ntBASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 KRT18P43-201ENST00000469825 1281 ntBASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.63■□□□□ 0.57
SMC1BQ8NDV3 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SMC1BQ8NDV3 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms