Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CDH13P55290 AC091951.1-201ENST00000512854 2465 ntBASIC15.58■□□□□ 0.09
CDH13P55290 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CDH13P55290 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CDH13P55290 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CDH13P55290 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.58■□□□□ 0.08
CDH13P55290 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.58■□□□□ 0.08
CDH13P55290 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CDH13P55290 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.58■□□□□ 0.08
CDH13P55290 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.58■□□□□ 0.08
CDH13P55290 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.58■□□□□ 0.08
CDH13P55290 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CDH13P55290 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.58■□□□□ 0.08
CDH13P55290 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 RNA5SP410-201ENST00000516285 106 ntBASIC15.58■□□□□ 0.08
CDH13P55290 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
CDH13P55290 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.58■□□□□ 0.08
CDH13P55290 AC243562.1-201ENST00000560672 389 ntBASIC15.58■□□□□ 0.08
CDH13P55290 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.58■□□□□ 0.08
CDH13P55290 MIR4313-201ENST00000580760 101 ntBASIC15.58■□□□□ 0.08
CDH13P55290 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.58■□□□□ 0.08
CDH13P55290 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
CDH13P55290 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CDH13P55290 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.58■□□□□ 0.08
CDH13P55290 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH13P55290 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
CDH13P55290 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
CDH13P55290 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CDH13P55290 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
CDH13P55290 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.57■□□□□ 0.08
CDH13P55290 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.57■□□□□ 0.08
CDH13P55290 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 MIR940-201ENST00000401276 94 ntBASIC15.57■□□□□ 0.08
CDH13P55290 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.57■□□□□ 0.08
CDH13P55290 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CDH13P55290 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.57■□□□□ 0.08
CDH13P55290 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.57■□□□□ 0.08
CDH13P55290 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.57■□□□□ 0.08
CDH13P55290 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
CDH13P55290 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.57■□□□□ 0.08
CDH13P55290 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.57■□□□□ 0.08
CDH13P55290 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CDH13P55290 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.57■□□□□ 0.08
CDH13P55290 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.57■□□□□ 0.08
CDH13P55290 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CDH13P55290 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDH13P55290 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.57■□□□□ 0.08
CDH13P55290 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CDH13P55290 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDH13P55290 AC112693.3-201ENST00000624819 1983 ntBASIC15.56■□□□□ 0.08
CDH13P55290 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH13P55290 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH13P55290 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.56■□□□□ 0.08
CDH13P55290 C18orf15-201ENST00000623680 2534 ntBASIC15.56■□□□□ 0.08
CDH13P55290 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH13P55290 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDH13P55290 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CDH13P55290 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms