Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
EPHB3P54753 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
EPHB3P54753 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.5■□□□□ 0.23
EPHB3P54753 AL596087.1-201ENST00000400979 1969 ntBASIC16.5■□□□□ 0.23
EPHB3P54753 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.5■□□□□ 0.23
EPHB3P54753 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.5■□□□□ 0.23
EPHB3P54753 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.5■□□□□ 0.23
EPHB3P54753 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.5■□□□□ 0.23
EPHB3P54753 AC104989.1-201ENST00000519711 778 ntBASIC16.5■□□□□ 0.23
EPHB3P54753 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.5■□□□□ 0.23
EPHB3P54753 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.5■□□□□ 0.23
EPHB3P54753 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.5■□□□□ 0.23
EPHB3P54753 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
EPHB3P54753 COX11-210ENST00000639671 696 ntBASIC16.5■□□□□ 0.23
EPHB3P54753 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
EPHB3P54753 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.5■□□□□ 0.23
EPHB3P54753 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.5■□□□□ 0.23
EPHB3P54753 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.5■□□□□ 0.23
EPHB3P54753 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.5■□□□□ 0.23
EPHB3P54753 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.5■□□□□ 0.23
EPHB3P54753 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.5■□□□□ 0.23
EPHB3P54753 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
EPHB3P54753 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
EPHB3P54753 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 PCDHA14-201ENST00000506751 2298 ntBASIC16.49■□□□□ 0.23
EPHB3P54753 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.49■□□□□ 0.23
EPHB3P54753 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.49■□□□□ 0.23
EPHB3P54753 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
EPHB3P54753 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
EPHB3P54753 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.49■□□□□ 0.23
EPHB3P54753 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.49■□□□□ 0.23
EPHB3P54753 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.49■□□□□ 0.23
EPHB3P54753 HLA-V-201ENST00000429037 534 ntBASIC16.49■□□□□ 0.23
EPHB3P54753 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 KRT223P-202ENST00000449164 1292 ntBASIC16.49■□□□□ 0.23
EPHB3P54753 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
EPHB3P54753 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.49■□□□□ 0.23
EPHB3P54753 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.49■□□□□ 0.23
EPHB3P54753 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.49■□□□□ 0.23
EPHB3P54753 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.49■□□□□ 0.23
EPHB3P54753 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.49■□□□□ 0.23
EPHB3P54753 AC009486.1-201ENST00000569860 813 ntBASIC16.49■□□□□ 0.23
EPHB3P54753 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.49■□□□□ 0.23
EPHB3P54753 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.49■□□□□ 0.23
EPHB3P54753 MIR6775-201ENST00000617557 69 ntBASIC16.49■□□□□ 0.23
EPHB3P54753 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.49■□□□□ 0.23
EPHB3P54753 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 PCDHA12-202ENST00000613593 2588 ntBASIC16.49■□□□□ 0.23
EPHB3P54753 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
EPHB3P54753 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
EPHB3P54753 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.49■□□□□ 0.23
EPHB3P54753 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
EPHB3P54753 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
EPHB3P54753 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.49■□□□□ 0.23
EPHB3P54753 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.48■□□□□ 0.23
EPHB3P54753 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 AC092364.2-201ENST00000596710 2692 ntBASIC16.48■□□□□ 0.23
EPHB3P54753 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.48■□□□□ 0.23
EPHB3P54753 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
EPHB3P54753 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms