Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC11O43248 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC11O43248 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.1■□□□□ 0.17
HOXC11O43248 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.1■□□□□ 0.17
HOXC11O43248 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.09■□□□□ 0.17
HOXC11O43248 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.09■□□□□ 0.17
HOXC11O43248 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.09■□□□□ 0.17
HOXC11O43248 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
HOXC11O43248 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.09■□□□□ 0.17
HOXC11O43248 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.09■□□□□ 0.17
HOXC11O43248 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HOXC11O43248 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.09■□□□□ 0.17
HOXC11O43248 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.09■□□□□ 0.17
HOXC11O43248 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.09■□□□□ 0.17
HOXC11O43248 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 TDH-203ENST00000531764 1110 ntBASIC16.09■□□□□ 0.17
HOXC11O43248 SNX29P1-201ENST00000548357 1007 ntBASIC16.09■□□□□ 0.17
HOXC11O43248 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.09■□□□□ 0.17
HOXC11O43248 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.09■□□□□ 0.17
HOXC11O43248 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.09■□□□□ 0.17
HOXC11O43248 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.09■□□□□ 0.17
HOXC11O43248 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.09■□□□□ 0.17
HOXC11O43248 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.09■□□□□ 0.17
HOXC11O43248 COX11-210ENST00000639671 696 ntBASIC16.09■□□□□ 0.17
HOXC11O43248 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.09■□□□□ 0.17
HOXC11O43248 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
HOXC11O43248 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 AL596087.1-201ENST00000400979 1969 ntBASIC16.09■□□□□ 0.17
HOXC11O43248 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.09■□□□□ 0.17
HOXC11O43248 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HOXC11O43248 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.09■□□□□ 0.17
HOXC11O43248 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.09■□□□□ 0.17
HOXC11O43248 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.09■□□□□ 0.17
HOXC11O43248 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
HOXC11O43248 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.08■□□□□ 0.17
HOXC11O43248 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
HOXC11O43248 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HOXC11O43248 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.08■□□□□ 0.17
HOXC11O43248 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.17
HOXC11O43248 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
HOXC11O43248 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
HOXC11O43248 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.08■□□□□ 0.17
HOXC11O43248 AL133267.1-201ENST00000398220 340 ntBASIC16.08■□□□□ 0.16
HOXC11O43248 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.08■□□□□ 0.16
HOXC11O43248 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HOXC11O43248 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.08■□□□□ 0.16
HOXC11O43248 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
HOXC11O43248 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.08■□□□□ 0.16
HOXC11O43248 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HOXC11O43248 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.08■□□□□ 0.16
HOXC11O43248 MIR4259-201ENST00000584466 101 ntBASIC16.08■□□□□ 0.16
HOXC11O43248 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.08■□□□□ 0.16
HOXC11O43248 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.08■□□□□ 0.16
HOXC11O43248 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HOXC11O43248 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
HOXC11O43248 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.08■□□□□ 0.16
HOXC11O43248 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
HOXC11O43248 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
HOXC11O43248 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HOXC11O43248 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HOXC11O43248 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.08■□□□□ 0.16
HOXC11O43248 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.08■□□□□ 0.16
HOXC11O43248 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HOXC11O43248 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HOXC11O43248 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
HOXC11O43248 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HOXC11O43248 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HOXC11O43248 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.08■□□□□ 0.16
HOXC11O43248 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC11O43248 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
HOXC11O43248 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HOXC11O43248 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC11O43248 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC11O43248 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
HOXC11O43248 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.07■□□□□ 0.16
HOXC11O43248 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC11O43248 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HOXC11O43248 AL136379.1-201ENST00000623471 2642 ntBASIC16.07■□□□□ 0.16
HOXC11O43248 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
HOXC11O43248 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC11O43248 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HOXC11O43248 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HOXC11O43248 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.07■□□□□ 0.16
HOXC11O43248 AC005229.1-201ENST00000392885 409 ntBASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms