Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.04■□□□□ -0
NR1H4Q96RI1 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
NR1H4Q96RI1 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
NR1H4Q96RI1 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
NR1H4Q96RI1 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.04■□□□□ -0
NR1H4Q96RI1 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.04■□□□□ -0
NR1H4Q96RI1 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 TERF1P1-201ENST00000311003 1181 ntBASIC15.04■□□□□ -0
NR1H4Q96RI1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.04■□□□□ -0
NR1H4Q96RI1 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 KLF4P1-201ENST00000412782 1185 ntBASIC15.04■□□□□ -0
NR1H4Q96RI1 HLA-F-220ENST00000434407 884 ntBASIC15.04■□□□□ -0
NR1H4Q96RI1 KRT18P57-201ENST00000443599 1254 ntBASIC15.04■□□□□ -0
NR1H4Q96RI1 AL359075.1-203ENST00000462729 1002 ntBASIC15.04■□□□□ -0
NR1H4Q96RI1 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.04■□□□□ -0
NR1H4Q96RI1 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
NR1H4Q96RI1 LITAF-220ENST00000620789 692 ntTSL 5 BASIC15.04■□□□□ -0
NR1H4Q96RI1 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.04■□□□□ -0
NR1H4Q96RI1 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 AC126335.2-201ENST00000623362 4637 ntBASIC15.04■□□□□ -0
NR1H4Q96RI1 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.04■□□□□ -0
NR1H4Q96RI1 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
NR1H4Q96RI1 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
NR1H4Q96RI1 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.04■□□□□ -0
NR1H4Q96RI1 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
NR1H4Q96RI1 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC15.03■□□□□ -0
NR1H4Q96RI1 SLC6A6P1-201ENST00000413933 1850 ntBASIC15.03■□□□□ -0
NR1H4Q96RI1 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.03■□□□□ -0
NR1H4Q96RI1 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.03■□□□□ -0
NR1H4Q96RI1 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC15.03■□□□□ -0
NR1H4Q96RI1 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 AL353692.3-201ENST00000407031 1396 ntBASIC15.03■□□□□ -0
NR1H4Q96RI1 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC15.03■□□□□ -0
NR1H4Q96RI1 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.03■□□□□ -0
NR1H4Q96RI1 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 AC005521.1-201ENST00000393351 872 ntBASIC15.03■□□□□ -0
NR1H4Q96RI1 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.03■□□□□ -0
NR1H4Q96RI1 FAM8A3P-201ENST00000427218 844 ntBASIC15.03■□□□□ -0
NR1H4Q96RI1 AC117947.1-201ENST00000427448 529 ntBASIC15.03■□□□□ -0
NR1H4Q96RI1 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC15.03■□□□□ -0
NR1H4Q96RI1 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC15.03■□□□□ -0
NR1H4Q96RI1 AC020765.3-201ENST00000613051 740 ntBASIC15.03■□□□□ -0
NR1H4Q96RI1 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
NR1H4Q96RI1 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.03■□□□□ -0
NR1H4Q96RI1 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.03■□□□□ -0
NR1H4Q96RI1 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
NR1H4Q96RI1 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
NR1H4Q96RI1 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
NR1H4Q96RI1 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.03■□□□□ -0
NR1H4Q96RI1 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms