Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 FAM8A3P-201ENST00000427218 844 ntBASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PTCHD1Q96NR3 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 AC046158.3-201ENST00000624947 2558 ntBASIC15□□□□□ -0.01
PTCHD1Q96NR3 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 TSPY16P-201ENST00000449843 468 ntBASIC15□□□□□ -0.01
PTCHD1Q96NR3 UGT1A2P-201ENST00000454886 866 ntBASIC15□□□□□ -0.01
PTCHD1Q96NR3 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 AC010336.2-201ENST00000564226 506 ntBASIC15□□□□□ -0.01
PTCHD1Q96NR3 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 REXO1L1P-202ENST00000608646 1974 ntBASIC15□□□□□ -0.01
PTCHD1Q96NR3 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PTCHD1Q96NR3 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
PTCHD1Q96NR3 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.99□□□□□ -0.01
PTCHD1Q96NR3 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms