Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.64■□□□□ 0.25
IRX4P78413 AC027369.6-201ENST00000525520 931 ntBASIC16.64■□□□□ 0.25
IRX4P78413 AC109635.5-201ENST00000533593 962 ntBASIC16.64■□□□□ 0.25
IRX4P78413 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.64■□□□□ 0.25
IRX4P78413 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.64■□□□□ 0.25
IRX4P78413 AP000842.3-202ENST00000569238 1080 ntBASIC16.64■□□□□ 0.25
IRX4P78413 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.64■□□□□ 0.25
IRX4P78413 AC027307.2-201ENST00000591252 911 ntBASIC16.64■□□□□ 0.25
IRX4P78413 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 AL590560.3-201ENST00000623350 461 ntBASIC16.64■□□□□ 0.25
IRX4P78413 AC008267.7-201ENST00000624570 1194 ntBASIC16.64■□□□□ 0.25
IRX4P78413 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
IRX4P78413 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.64■□□□□ 0.25
IRX4P78413 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.64■□□□□ 0.25
IRX4P78413 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
IRX4P78413 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.63■□□□□ 0.25
IRX4P78413 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.63■□□□□ 0.25
IRX4P78413 PRAL-201ENST00000624952 3286 ntBASIC16.63■□□□□ 0.25
IRX4P78413 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
IRX4P78413 AL365209.1-201ENST00000624418 6473 ntBASIC16.63■□□□□ 0.25
IRX4P78413 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.63■□□□□ 0.25
IRX4P78413 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
IRX4P78413 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.63■□□□□ 0.25
IRX4P78413 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 MIR6752-201ENST00000618442 71 ntBASIC16.63■□□□□ 0.25
IRX4P78413 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.63■□□□□ 0.25
IRX4P78413 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 AC144831.1-201ENST00000573312 2656 ntBASIC16.63■□□□□ 0.25
IRX4P78413 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.63■□□□□ 0.25
IRX4P78413 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
IRX4P78413 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
IRX4P78413 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.62■□□□□ 0.25
IRX4P78413 GGT3P-204ENST00000453783 1664 ntBASIC16.62■□□□□ 0.25
IRX4P78413 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.62■□□□□ 0.25
IRX4P78413 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
IRX4P78413 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
IRX4P78413 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
IRX4P78413 MIR346-201ENST00000362234 95 ntBASIC16.62■□□□□ 0.25
IRX4P78413 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
IRX4P78413 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.62■□□□□ 0.25
IRX4P78413 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.62■□□□□ 0.25
IRX4P78413 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.62■□□□□ 0.25
IRX4P78413 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.62■□□□□ 0.25
IRX4P78413 AC013467.2-201ENST00000605472 835 ntBASIC16.62■□□□□ 0.25
IRX4P78413 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
IRX4P78413 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
IRX4P78413 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.62■□□□□ 0.25
IRX4P78413 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.62■□□□□ 0.25
IRX4P78413 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
IRX4P78413 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms