Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
RIPK4P57078 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC20.74■□□□□ 0.91
RIPK4P57078 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RIPK4P57078 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
RIPK4P57078 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC20.73■□□□□ 0.91
RIPK4P57078 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
RIPK4P57078 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
RIPK4P57078 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC20.73■□□□□ 0.91
RIPK4P57078 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC20.73■□□□□ 0.91
RIPK4P57078 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.73■□□□□ 0.91
RIPK4P57078 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 DFFBP1-201ENST00000433250 979 ntBASIC20.73■□□□□ 0.91
RIPK4P57078 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.73■□□□□ 0.91
RIPK4P57078 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.73■□□□□ 0.91
RIPK4P57078 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.73■□□□□ 0.91
RIPK4P57078 SPDYE22P-201ENST00000582158 798 ntBASIC20.73■□□□□ 0.91
RIPK4P57078 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
RIPK4P57078 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC20.73■□□□□ 0.91
RIPK4P57078 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC20.73■□□□□ 0.91
RIPK4P57078 AL391069.4-201ENST00000609583 481 ntBASIC20.73■□□□□ 0.91
RIPK4P57078 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.73■□□□□ 0.91
RIPK4P57078 AL662799.1-202ENST00000614205 422 ntBASIC20.73■□□□□ 0.91
RIPK4P57078 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC20.73■□□□□ 0.91
RIPK4P57078 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
RIPK4P57078 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 ANKRD26P3-201ENST00000454044 2748 ntBASIC20.73■□□□□ 0.91
RIPK4P57078 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC20.73■□□□□ 0.91
RIPK4P57078 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RIPK4P57078 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
RIPK4P57078 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
RIPK4P57078 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.72■□□□□ 0.91
RIPK4P57078 DEK-201ENST00000244776 1441 ntTSL 2 BASIC20.72■□□□□ 0.91
RIPK4P57078 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
RIPK4P57078 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.72■□□□□ 0.91
RIPK4P57078 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC20.72■□□□□ 0.91
RIPK4P57078 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.72■□□□□ 0.91
RIPK4P57078 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC20.72■□□□□ 0.91
RIPK4P57078 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC20.72■□□□□ 0.91
RIPK4P57078 COX11-202ENST00000571584 1108 ntTSL 2 BASIC20.72■□□□□ 0.91
RIPK4P57078 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.72■□□□□ 0.91
RIPK4P57078 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC20.72■□□□□ 0.91
RIPK4P57078 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.72■□□□□ 0.91
RIPK4P57078 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC20.72■□□□□ 0.91
RIPK4P57078 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.72■□□□□ 0.91
RIPK4P57078 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 AC008741.2-201ENST00000612792 3115 ntBASIC20.72■□□□□ 0.91
RIPK4P57078 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.72■□□□□ 0.91
RIPK4P57078 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
RIPK4P57078 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
RIPK4P57078 MST1L-201ENST00000442552 2185 ntBASIC20.72■□□□□ 0.91
RIPK4P57078 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
RIPK4P57078 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC20.72■□□□□ 0.91
RIPK4P57078 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RIPK4P57078 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC20.71■□□□□ 0.91
RIPK4P57078 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC20.71■□□□□ 0.91
RIPK4P57078 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
RIPK4P57078 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.71■□□□□ 0.91
RIPK4P57078 TAF8-206ENST00000472818 719 ntTSL 2 BASIC20.71■□□□□ 0.91
RIPK4P57078 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC20.71■□□□□ 0.91
RIPK4P57078 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC20.71■□□□□ 0.91
RIPK4P57078 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC20.71■□□□□ 0.91
RIPK4P57078 RARRES2P5-201ENST00000564013 466 ntBASIC20.71■□□□□ 0.91
RIPK4P57078 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC20.71■□□□□ 0.91
RIPK4P57078 AL158212.4-201ENST00000624062 1286 ntBASIC20.71■□□□□ 0.91
RIPK4P57078 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
RIPK4P57078 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
RIPK4P57078 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
RIPK4P57078 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
RIPK4P57078 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
RIPK4P57078 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms