Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NR1H2P55055 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 NCF1C-201ENST00000438382 1427 ntBASIC15.18■□□□□ 0.02
NR1H2P55055 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
NR1H2P55055 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
NR1H2P55055 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.18■□□□□ 0.02
NR1H2P55055 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
NR1H2P55055 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.18■□□□□ 0.02
NR1H2P55055 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.18■□□□□ 0.02
NR1H2P55055 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
NR1H2P55055 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.18■□□□□ 0.02
NR1H2P55055 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.18■□□□□ 0.02
NR1H2P55055 PGAM5P1-201ENST00000518923 814 ntBASIC15.18■□□□□ 0.02
NR1H2P55055 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.18■□□□□ 0.02
NR1H2P55055 AL691403.2-201ENST00000618460 490 ntBASIC15.18■□□□□ 0.02
NR1H2P55055 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.18■□□□□ 0.02
NR1H2P55055 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.18■□□□□ 0.02
NR1H2P55055 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.18■□□□□ 0.02
NR1H2P55055 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
NR1H2P55055 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
NR1H2P55055 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.18■□□□□ 0.02
NR1H2P55055 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
NR1H2P55055 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NR1H2P55055 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
NR1H2P55055 AC097376.2-205ENST00000610159 5334 ntBASIC15.18■□□□□ 0.02
NR1H2P55055 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.17■□□□□ 0.02
NR1H2P55055 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.17■□□□□ 0.02
NR1H2P55055 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
NR1H2P55055 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
NR1H2P55055 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 AL049757.1-201ENST00000616842 1596 ntBASIC15.17■□□□□ 0.02
NR1H2P55055 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.17■□□□□ 0.02
NR1H2P55055 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.17■□□□□ 0.02
NR1H2P55055 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
NR1H2P55055 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 MIR3687-2-201ENST00000577708 61 ntBASIC15.17■□□□□ 0.02
NR1H2P55055 MIR3687-1-201ENST00000614492 61 ntBASIC15.17■□□□□ 0.02
NR1H2P55055 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
NR1H2P55055 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
NR1H2P55055 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.17■□□□□ 0.02
NR1H2P55055 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.17■□□□□ 0.02
NR1H2P55055 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
NR1H2P55055 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.17■□□□□ 0.02
NR1H2P55055 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NR1H2P55055 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms