Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.71■□□□□ 0.59
SMC1BQ8NDV3 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
SMC1BQ8NDV3 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
SMC1BQ8NDV3 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
SMC1BQ8NDV3 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 FGFR3P1-201ENST00000449999 601 ntBASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 DRD5P1-201ENST00000456605 1438 ntBASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 AC019193.1-201ENST00000506678 823 ntBASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 AC005740.2-201ENST00000511085 419 ntBASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 AC141586.1-203ENST00000567242 366 ntBASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 AL691432.1-201ENST00000596308 1422 ntBASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.7■□□□□ 0.58
SMC1BQ8NDV3 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 AC067852.2-201ENST00000590513 2313 ntBASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 AC012317.2-201ENST00000623305 2251 ntBASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 ACTG1P2-201ENST00000415776 1125 ntBASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 ACTG1P11-201ENST00000425411 1125 ntBASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 AC025181.2-201ENST00000606994 802 ntBASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 AF254983.2-201ENST00000612331 135 ntBASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMC1BQ8NDV3 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 AC026316.1-201ENST00000398900 414 ntBASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.68■□□□□ 0.58
SMC1BQ8NDV3 AC097065.1-201ENST00000425737 517 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms