Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 LBX2-201ENST00000341396 886 ntTSL 3 BASIC12.97□□□□□ -0.33
LMO4P61968 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 BCRP2-202ENST00000447763 634 ntBASIC12.97□□□□□ -0.33
LMO4P61968 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
LMO4P61968 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 BCRP6-201ENST00000510112 632 ntBASIC12.97□□□□□ -0.33
LMO4P61968 BCRP7-201ENST00000511549 544 ntBASIC12.97□□□□□ -0.33
LMO4P61968 AP001889.1-201ENST00000525414 633 ntBASIC12.97□□□□□ -0.33
LMO4P61968 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC12.97□□□□□ -0.33
LMO4P61968 AP001063.1-201ENST00000568332 529 ntBASIC12.97□□□□□ -0.33
LMO4P61968 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC12.97□□□□□ -0.33
LMO4P61968 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 PDIA3P1-201ENST00000471856 1510 ntBASIC12.97□□□□□ -0.33
LMO4P61968 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 TP73-213ENST00000604479 1623 ntTSL 5 BASIC12.96□□□□□ -0.33
LMO4P61968 AMT-233ENST00000636522 1620 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC12.96□□□□□ -0.33
LMO4P61968 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
LMO4P61968 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
LMO4P61968 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
LMO4P61968 BAATP1-201ENST00000412284 1225 ntBASIC12.96□□□□□ -0.33
LMO4P61968 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC12.96□□□□□ -0.33
LMO4P61968 RPL28-203ENST00000428193 573 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 AC093433.1-201ENST00000458048 571 ntBASIC12.96□□□□□ -0.33
LMO4P61968 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
LMO4P61968 RPL28-207ENST00000558815 616 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC12.96□□□□□ -0.33
LMO4P61968 APRT-204ENST00000563655 709 ntTSL 5 BASIC12.96□□□□□ -0.33
LMO4P61968 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC12.96□□□□□ -0.33
LMO4P61968 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC12.96□□□□□ -0.33
LMO4P61968 AC015910.1-201ENST00000579400 975 ntBASIC12.96□□□□□ -0.33
LMO4P61968 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
LMO4P61968 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.96□□□□□ -0.33
LMO4P61968 AC093813.1-201ENST00000605066 256 ntBASIC12.96□□□□□ -0.33
LMO4P61968 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC12.96□□□□□ -0.33
LMO4P61968 AC005252.2-201ENST00000624630 1141 ntBASIC12.96□□□□□ -0.33
LMO4P61968 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.96□□□□□ -0.33
LMO4P61968 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
LMO4P61968 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LMO4P61968 USE1-206ENST00000595101 1776 ntTSL 2 BASIC12.96□□□□□ -0.34
LMO4P61968 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LMO4P61968 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
LMO4P61968 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC12.96□□□□□ -0.34
LMO4P61968 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
LMO4P61968 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.96□□□□□ -0.34
LMO4P61968 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
LMO4P61968 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC12.96□□□□□ -0.34
LMO4P61968 AC018695.7-201ENST00000624587 2492 ntBASIC12.96□□□□□ -0.34
LMO4P61968 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC12.96□□□□□ -0.34
LMO4P61968 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC12.96□□□□□ -0.34
LMO4P61968 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
LMO4P61968 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
LMO4P61968 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LMO4P61968 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms