Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
HMGB1P09429 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGB1P09429 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
HMGB1P09429 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGB1P09429 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HMGB1P09429 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.75■□□□□ 0.59
HMGB1P09429 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
HMGB1P09429 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.75■□□□□ 0.59
HMGB1P09429 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 SERBP1P3-201ENST00000459980 809 ntBASIC18.75■□□□□ 0.59
HMGB1P09429 HLA-V-204ENST00000476601 1289 ntBASIC18.75■□□□□ 0.59
HMGB1P09429 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGB1P09429 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.75■□□□□ 0.59
HMGB1P09429 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.75■□□□□ 0.59
HMGB1P09429 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.75■□□□□ 0.59
HMGB1P09429 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGB1P09429 AP001160.2-201ENST00000596071 487 ntBASIC18.75■□□□□ 0.59
HMGB1P09429 MIR6069-201ENST00000620069 79 ntBASIC18.75■□□□□ 0.59
HMGB1P09429 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGB1P09429 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGB1P09429 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HMGB1P09429 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB1P09429 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HMGB1P09429 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 AC127383.1-201ENST00000444697 1800 ntBASIC18.74■□□□□ 0.59
HMGB1P09429 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGB1P09429 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
HMGB1P09429 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGB1P09429 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGB1P09429 AL607033.1-201ENST00000623900 1599 ntBASIC18.74■□□□□ 0.59
HMGB1P09429 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGB1P09429 AL080243.2-201ENST00000418783 582 ntBASIC18.74■□□□□ 0.59
HMGB1P09429 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.74■□□□□ 0.59
HMGB1P09429 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGB1P09429 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGB1P09429 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.74■□□□□ 0.59
HMGB1P09429 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGB1P09429 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
HMGB1P09429 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGB1P09429 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
HMGB1P09429 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGB1P09429 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB1P09429 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 AC136621.1-201ENST00000624017 2304 ntBASIC18.73■□□□□ 0.59
HMGB1P09429 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HMGB1P09429 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGB1P09429 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
HMGB1P09429 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
HMGB1P09429 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HMGB1P09429 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 AL645939.2-201ENST00000427340 991 ntBASIC18.73■□□□□ 0.59
HMGB1P09429 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.73■□□□□ 0.59
HMGB1P09429 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGB1P09429 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGB1P09429 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGB1P09429 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGB1P09429 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HMGB1P09429 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGB1P09429 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 Z92544.3-201ENST00000624747 417 ntBASIC18.73■□□□□ 0.59
HMGB1P09429 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms