Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC12.89□□□□□ -0.35
HMGB3O15347 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC12.89□□□□□ -0.35
HMGB3O15347 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
HMGB3O15347 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
HMGB3O15347 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.89□□□□□ -0.35
HMGB3O15347 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
HMGB3O15347 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC12.89□□□□□ -0.35
HMGB3O15347 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 BX664615.1-201ENST00000443558 458 ntBASIC12.89□□□□□ -0.35
HMGB3O15347 S100A2-206ENST00000497140 697 ntTSL 2 BASIC12.89□□□□□ -0.35
HMGB3O15347 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC12.89□□□□□ -0.35
HMGB3O15347 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC12.89□□□□□ -0.35
HMGB3O15347 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC12.89□□□□□ -0.35
HMGB3O15347 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
HMGB3O15347 AC090616.6-201ENST00000582640 721 ntBASIC12.89□□□□□ -0.35
HMGB3O15347 COPE-211ENST00000600932 1144 ntTSL 5 BASIC12.89□□□□□ -0.35
HMGB3O15347 AC145285.6-201ENST00000604632 637 ntBASIC12.89□□□□□ -0.35
HMGB3O15347 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC12.89□□□□□ -0.35
HMGB3O15347 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 GPR173-201ENST00000332582 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 HECW1-201ENST00000395891 9501 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 TOP3BP1-201ENST00000420768 1380 ntBASIC12.89□□□□□ -0.35
HMGB3O15347 AC091951.1-201ENST00000512854 2465 ntBASIC12.89□□□□□ -0.35
HMGB3O15347 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.89□□□□□ -0.35
HMGB3O15347 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
HMGB3O15347 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC12.89□□□□□ -0.35
HMGB3O15347 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC12.89□□□□□ -0.35
HMGB3O15347 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC12.89□□□□□ -0.35
HMGB3O15347 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 AC092123.2-201ENST00000611189 5421 ntBASIC12.89□□□□□ -0.35
HMGB3O15347 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
HMGB3O15347 GOLGA8DP-202ENST00000341390 2184 ntBASIC12.88□□□□□ -0.35
HMGB3O15347 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
HMGB3O15347 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC12.88□□□□□ -0.35
HMGB3O15347 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.88□□□□□ -0.35
HMGB3O15347 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.88□□□□□ -0.35
HMGB3O15347 TMBIM7P-203ENST00000641617 1718 ntBASIC12.88□□□□□ -0.35
HMGB3O15347 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.88□□□□□ -0.35
HMGB3O15347 TCAF2P1-201ENST00000291129 2421 ntBASIC12.88□□□□□ -0.35
HMGB3O15347 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
HMGB3O15347 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC12.88□□□□□ -0.35
HMGB3O15347 MYO9B-206ENST00000595618 7623 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 MIR648-201ENST00000385046 94 ntBASIC12.88□□□□□ -0.35
HMGB3O15347 CTNS-203ENST00000399306 803 ntTSL 3 BASIC12.88□□□□□ -0.35
HMGB3O15347 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 DANCR-204ENST00000444958 709 ntTSL 3 BASIC12.88□□□□□ -0.35
HMGB3O15347 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC12.88□□□□□ -0.35
HMGB3O15347 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC12.88□□□□□ -0.35
HMGB3O15347 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC12.88□□□□□ -0.35
HMGB3O15347 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 TP73-AS1-210ENST00000637775 1455 ntBASIC12.88□□□□□ -0.35
HMGB3O15347 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
HMGB3O15347 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.88□□□□□ -0.35
HMGB3O15347 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
HMGB3O15347 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC12.88□□□□□ -0.35
HMGB3O15347 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.88□□□□□ -0.35
HMGB3O15347 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.88□□□□□ -0.35
HMGB3O15347 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
HMGB3O15347 NIN-202ENST00000324330 4364 ntTSL 5 BASIC12.88□□□□□ -0.35
HMGB3O15347 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 POLL-217ENST00000628479 1953 ntTSL 5 BASIC12.87□□□□□ -0.35
HMGB3O15347 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
HMGB3O15347 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HMGB3O15347 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms