Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CHMP1AQ9HD42 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 CYP51A1P2-201ENST00000419457 1499 ntBASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.82□□□□□ -0.2
CHMP1AQ9HD42 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 AC138035.3-201ENST00000622706 2791 ntBASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 KRT18P27-201ENST00000427733 1299 ntBASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 AL356488.2-201ENST00000602755 427 ntBASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.81□□□□□ -0.2
CHMP1AQ9HD42 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms