Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 PDIA3P2-201ENST00000428073 158 ntBASIC15.44■□□□□ 0.06
VPS13AQ96RL7 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 AC009084.3-201ENST00000623356 437 ntBASIC15.44■□□□□ 0.06
VPS13AQ96RL7 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
VPS13AQ96RL7 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 AL139008.1-201ENST00000437894 228 ntBASIC15.43■□□□□ 0.06
VPS13AQ96RL7 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 AC007663.3-201ENST00000609632 465 ntBASIC15.43■□□□□ 0.06
VPS13AQ96RL7 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VPS13AQ96RL7 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 AC007274.2-201ENST00000421675 662 ntBASIC15.42■□□□□ 0.06
VPS13AQ96RL7 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 NEU3-205ENST00000531619 582 ntTSL 5 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 AC097065.1-201ENST00000425737 517 ntBASIC15.42■□□□□ 0.06
VPS13AQ96RL7 AC098935.1-201ENST00000446057 611 ntBASIC15.42■□□□□ 0.06
VPS13AQ96RL7 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 AC079178.1-201ENST00000420915 656 ntBASIC15.42■□□□□ 0.06
VPS13AQ96RL7 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 AP003171.2-201ENST00000528208 925 ntBASIC15.42■□□□□ 0.06
VPS13AQ96RL7 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 DGAT2L7P-201ENST00000602462 744 ntBASIC15.42■□□□□ 0.06
VPS13AQ96RL7 AC138894.2-201ENST00000602838 371 ntBASIC15.42■□□□□ 0.06
VPS13AQ96RL7 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VPS13AQ96RL7 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 RN7SL713P-201ENST00000582127 302 ntBASIC15.41■□□□□ 0.06
VPS13AQ96RL7 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
VPS13AQ96RL7 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms