Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 MIR770-201ENST00000390219 98 ntBASIC16.32■□□□□ 0.2
RTL3Q8N8U3 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
RTL3Q8N8U3 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 PRAL-201ENST00000624952 3286 ntBASIC16.31■□□□□ 0.2
RTL3Q8N8U3 Z97205.2-201ENST00000564697 1639 ntBASIC16.31■□□□□ 0.2
RTL3Q8N8U3 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 TARDBPP1-201ENST00000442013 1203 ntBASIC16.31■□□□□ 0.2
RTL3Q8N8U3 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 AC008741.2-201ENST00000612792 3115 ntBASIC16.31■□□□□ 0.2
RTL3Q8N8U3 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.31■□□□□ 0.2
RTL3Q8N8U3 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 AL607033.1-201ENST00000623900 1599 ntBASIC16.3■□□□□ 0.2
RTL3Q8N8U3 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms