Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 PCGF3-213ENST00000620529 1899 ntBASIC9.89□□□□□ -0.83
LINC00643Q86TS7 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 NME2-201ENST00000393183 568 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 BET1L-204ENST00000410108 637 ntTSL 3 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 RBMS1-201ENST00000348849 4273 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 AC068338.2-201ENST00000563278 1430 ntBASIC9.89□□□□□ -0.83
LINC00643Q86TS7 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 TBC1D3P2-202ENST00000577902 1649 ntBASIC9.89□□□□□ -0.83
LINC00643Q86TS7 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 STXBP5L-201ENST00000273666 9496 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 AL031731.1-201ENST00000642131 2094 ntBASIC9.88□□□□□ -0.83
LINC00643Q86TS7 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
LINC00643Q86TS7 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC9.88□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms