Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC14.9□□□□□ -0.02
RFX4Q33E94 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.9□□□□□ -0.02
RFX4Q33E94 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.9□□□□□ -0.02
RFX4Q33E94 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.9□□□□□ -0.02
RFX4Q33E94 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX4Q33E94 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.9□□□□□ -0.02
RFX4Q33E94 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RFX4Q33E94 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX4Q33E94 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
RFX4Q33E94 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
RFX4Q33E94 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX4Q33E94 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX4Q33E94 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.9□□□□□ -0.02
RFX4Q33E94 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX4Q33E94 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.9□□□□□ -0.02
RFX4Q33E94 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RFX4Q33E94 SNX18-202ENST00000343017 3140 ntBASIC14.9□□□□□ -0.02
RFX4Q33E94 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
RFX4Q33E94 LINC00528-201ENST00000600723 2160 ntBASIC14.9□□□□□ -0.02
RFX4Q33E94 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
RFX4Q33E94 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
RFX4Q33E94 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX4Q33E94 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX4Q33E94 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.89□□□□□ -0.03
RFX4Q33E94 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.89□□□□□ -0.03
RFX4Q33E94 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX4Q33E94 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX4Q33E94 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
RFX4Q33E94 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX4Q33E94 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.89□□□□□ -0.03
RFX4Q33E94 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX4Q33E94 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC14.89□□□□□ -0.03
RFX4Q33E94 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.89□□□□□ -0.03
RFX4Q33E94 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC14.89□□□□□ -0.03
RFX4Q33E94 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX4Q33E94 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 AC008735.5-201ENST00000623544 497 ntBASIC14.89□□□□□ -0.03
RFX4Q33E94 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
RFX4Q33E94 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
RFX4Q33E94 AC007191.1-201ENST00000623179 2995 ntBASIC14.89□□□□□ -0.03
RFX4Q33E94 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC14.89□□□□□ -0.03
RFX4Q33E94 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
RFX4Q33E94 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
RFX4Q33E94 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.89□□□□□ -0.03
RFX4Q33E94 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX4Q33E94 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX4Q33E94 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
RFX4Q33E94 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
RFX4Q33E94 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.88□□□□□ -0.03
RFX4Q33E94 AC126365.1-201ENST00000578585 1514 ntBASIC14.88□□□□□ -0.03
RFX4Q33E94 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.88□□□□□ -0.03
RFX4Q33E94 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
RFX4Q33E94 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.88□□□□□ -0.03
RFX4Q33E94 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 MRPL20P1-201ENST00000400819 433 ntBASIC14.88□□□□□ -0.03
RFX4Q33E94 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC14.88□□□□□ -0.03
RFX4Q33E94 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.88□□□□□ -0.03
RFX4Q33E94 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.88□□□□□ -0.03
RFX4Q33E94 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 AC105339.3-201ENST00000560043 636 ntBASIC14.88□□□□□ -0.03
RFX4Q33E94 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.88□□□□□ -0.03
RFX4Q33E94 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.88□□□□□ -0.03
RFX4Q33E94 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.88□□□□□ -0.03
RFX4Q33E94 CLEC4GP1-201ENST00000596555 870 ntBASIC14.88□□□□□ -0.03
RFX4Q33E94 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC14.88□□□□□ -0.03
RFX4Q33E94 AL356488.2-201ENST00000602755 427 ntBASIC14.88□□□□□ -0.03
RFX4Q33E94 AL365330.1-201ENST00000607459 531 ntBASIC14.88□□□□□ -0.03
RFX4Q33E94 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
RFX4Q33E94 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.88□□□□□ -0.03
RFX4Q33E94 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
RFX4Q33E94 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX4Q33E94 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
RFX4Q33E94 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms