Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 SLC22A20-204ENST00000530038 1673 ntBASIC15.37■□□□□ 0.05
COL28A1Q2UY09 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 AC131009.4-201ENST00000624048 1740 ntBASIC15.37■□□□□ 0.05
COL28A1Q2UY09 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL28A1Q2UY09 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 AC078925.2-201ENST00000624013 1973 ntBASIC15.36■□□□□ 0.05
COL28A1Q2UY09 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 AC006277.1-201ENST00000624348 1610 ntBASIC15.36■□□□□ 0.05
COL28A1Q2UY09 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 KRT18P34-201ENST00000488218 1270 ntBASIC15.36■□□□□ 0.05
COL28A1Q2UY09 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 USP32P1-208ENST00000506594 1164 ntBASIC15.36■□□□□ 0.05
COL28A1Q2UY09 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 AL021578.1-201ENST00000613646 709 ntBASIC15.36■□□□□ 0.05
COL28A1Q2UY09 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL28A1Q2UY09 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 CSF2RBP1-201ENST00000447905 391 ntBASIC15.35■□□□□ 0.05
COL28A1Q2UY09 IGHJ2P-201ENST00000454480 60 ntBASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AC007551.1-201ENST00000457394 519 ntBASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AC079328.1-201ENST00000560358 952 ntBASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AC233724.13-201ENST00000598383 410 ntBASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AC013467.2-201ENST00000605472 835 ntBASIC15.35■□□□□ 0.05
COL28A1Q2UY09 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL28A1Q2UY09 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms