Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXF1Q12946 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXF1Q12946 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXF1Q12946 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXF1Q12946 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 FO393414.2-201ENST00000405153 598 ntBASIC14.43□□□□□ -0.1
FOXF1Q12946 AC055876.3-201ENST00000431496 288 ntBASIC14.43□□□□□ -0.1
FOXF1Q12946 PHKG1P2-201ENST00000457537 863 ntBASIC14.43□□□□□ -0.1
FOXF1Q12946 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXF1Q12946 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXF1Q12946 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXF1Q12946 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXF1Q12946 HNRNPUP1-201ENST00000554987 333 ntBASIC14.43□□□□□ -0.1
FOXF1Q12946 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.43□□□□□ -0.1
FOXF1Q12946 AC005498.2-205ENST00000593218 784 ntBASIC14.43□□□□□ -0.1
FOXF1Q12946 AC138649.4-201ENST00000612222 287 ntBASIC14.43□□□□□ -0.1
FOXF1Q12946 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.43□□□□□ -0.1
FOXF1Q12946 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.43□□□□□ -0.1
FOXF1Q12946 AL033527.5-202ENST00000641632 1098 ntBASIC14.43□□□□□ -0.1
FOXF1Q12946 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXF1Q12946 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXF1Q12946 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.43□□□□□ -0.1
FOXF1Q12946 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
FOXF1Q12946 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
FOXF1Q12946 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.43□□□□□ -0.1
FOXF1Q12946 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
FOXF1Q12946 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
FOXF1Q12946 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
FOXF1Q12946 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXF1Q12946 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 AL596257.1-201ENST00000641463 2694 ntBASIC14.42□□□□□ -0.1
FOXF1Q12946 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
FOXF1Q12946 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
FOXF1Q12946 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.42□□□□□ -0.1
FOXF1Q12946 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXF1Q12946 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
FOXF1Q12946 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.42□□□□□ -0.1
FOXF1Q12946 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.42□□□□□ -0.1
FOXF1Q12946 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.42□□□□□ -0.1
FOXF1Q12946 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXF1Q12946 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.42□□□□□ -0.1
FOXF1Q12946 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.42□□□□□ -0.1
FOXF1Q12946 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXF1Q12946 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.42□□□□□ -0.1
FOXF1Q12946 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
FOXF1Q12946 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.42□□□□□ -0.1
FOXF1Q12946 MIR6069-201ENST00000620069 79 ntBASIC14.42□□□□□ -0.1
FOXF1Q12946 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.42□□□□□ -0.1
FOXF1Q12946 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.42□□□□□ -0.1
FOXF1Q12946 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.42□□□□□ -0.1
FOXF1Q12946 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
FOXF1Q12946 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms