Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.13□□□□□ -0.31
NKX2-1P43699 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
NKX2-1P43699 MIR1224-201ENST00000408193 85 ntBASIC13.13□□□□□ -0.31
NKX2-1P43699 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC13.13□□□□□ -0.31
NKX2-1P43699 AP002383.4-201ENST00000442518 975 ntBASIC13.13□□□□□ -0.31
NKX2-1P43699 AC245100.5-201ENST00000452108 331 ntBASIC13.13□□□□□ -0.31
NKX2-1P43699 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.13□□□□□ -0.31
NKX2-1P43699 RNF146-204ENST00000476956 884 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 PNN-202ENST00000553331 656 ntTSL 3 BASIC13.13□□□□□ -0.31
NKX2-1P43699 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
NKX2-1P43699 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC13.13□□□□□ -0.31
NKX2-1P43699 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 AL358472.4-201ENST00000633140 710 ntBASIC13.13□□□□□ -0.31
NKX2-1P43699 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC13.13□□□□□ -0.31
NKX2-1P43699 AL805961.1-202ENST00000641562 540 ntBASIC13.13□□□□□ -0.31
NKX2-1P43699 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.13□□□□□ -0.31
NKX2-1P43699 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
NKX2-1P43699 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
NKX2-1P43699 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX2-1P43699 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX2-1P43699 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.12□□□□□ -0.31
NKX2-1P43699 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX2-1P43699 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
NKX2-1P43699 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
NKX2-1P43699 COPS8-203ENST00000409334 794 ntTSL 5 BASIC13.12□□□□□ -0.31
NKX2-1P43699 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC13.12□□□□□ -0.31
NKX2-1P43699 AP000867.3-201ENST00000524675 377 ntBASIC13.12□□□□□ -0.31
NKX2-1P43699 AC012615.1-201ENST00000565797 1299 ntBASIC13.12□□□□□ -0.31
NKX2-1P43699 NT5C-211ENST00000582170 653 ntTSL 3 BASIC13.12□□□□□ -0.31
NKX2-1P43699 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC13.12□□□□□ -0.31
NKX2-1P43699 AL445228.2-201ENST00000605589 952 ntBASIC13.12□□□□□ -0.31
NKX2-1P43699 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX2-1P43699 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.12□□□□□ -0.31
NKX2-1P43699 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX2-1P43699 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX2-1P43699 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.12□□□□□ -0.31
NKX2-1P43699 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
NKX2-1P43699 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.12□□□□□ -0.31
NKX2-1P43699 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX2-1P43699 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.12□□□□□ -0.31
NKX2-1P43699 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms