Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 WDR13-204ENST00000470124 437 ntTSL 322.31■■□□□ 1.163e-9■□□□□ 10.6
YBX3P16989 WNK1-217ENST00000544965 653 ntTSL 312.37□□□□□ -0.434e-7■□□□□ 10.6
YBX3P16989 HSD17B8-204ENST00000469186 933 ntTSL 524.08■■□□□ 1.457e-6■□□□□ 10.6
YBX3P16989 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.287e-6■□□□□ 10.6
YBX3P16989 RPS25-204ENST00000527853 1462 ntTSL 224■■□□□ 1.437e-21■□□□□ 10.6
YBX3P16989 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.637e-21■□□□□ 10.6
YBX3P16989 RPS25-203ENST00000527791 711 ntTSL 216.17■□□□□ 0.187e-21■□□□□ 10.6
YBX3P16989 RPS25-206ENST00000532567 508 ntTSL 28.29□□□□□ -1.087e-21■□□□□ 10.6
YBX3P16989 USP39-218ENST00000493829 1660 ntTSL 223.6■■□□□ 1.373e-7■□□□□ 10.6
YBX3P16989 INTS14-205ENST00000561769 564 ntTSL 429.03■■■□□ 2.246e-6■□□□□ 10.6
YBX3P16989 FAM3A-210ENST00000426266 936 ntTSL 326.05■■□□□ 1.766e-6■□□□□ 10.6
YBX3P16989 INTS14-211ENST00000567940 761 ntTSL 525.85■■□□□ 1.736e-6■□□□□ 10.6
YBX3P16989 INTS14-206ENST00000562830 492 ntTSL 425.85■■□□□ 1.736e-6■□□□□ 10.6
YBX3P16989 FAM3A-217ENST00000457212 905 ntTSL 525.7■■□□□ 1.76e-6■□□□□ 10.6
YBX3P16989 FAM3A-207ENST00000416319 1113 ntTSL 524.89■■□□□ 1.586e-6■□□□□ 10.6
YBX3P16989 C19orf24-205ENST00000590269 751 ntTSL 324.74■■□□□ 1.553e-8■□□□□ 10.6
YBX3P16989 FAM3A-216ENST00000449971 1056 ntTSL 524.3■■□□□ 1.486e-6■□□□□ 10.6
YBX3P16989 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.426e-6■□□□□ 10.6
YBX3P16989 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC23.32■■□□□ 1.326e-6■□□□□ 10.6
YBX3P16989 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC23.2■■□□□ 1.36e-6■□□□□ 10.6
YBX3P16989 INTS14-212ENST00000568573 618 ntTSL 423.08■■□□□ 1.296e-6■□□□□ 10.6
YBX3P16989 INTS14-216ENST00000569565 772 ntTSL 522.97■■□□□ 1.276e-6■□□□□ 10.6
YBX3P16989 TMEM237-201ENST00000286196 1805 ntTSL 522.52■■□□□ 1.26e-6■□□□□ 10.6
YBX3P16989 MESD-202ENST00000422879 1392 ntTSL 221.52■■□□□ 1.046e-6■□□□□ 10.6
YBX3P16989 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.93■□□□□ 0.946e-6■□□□□ 10.6
YBX3P16989 TPP2-205ENST00000490010 691 ntTSL 220.67■□□□□ 0.96e-6■□□□□ 10.6
YBX3P16989 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC20.46■□□□□ 0.873e-23■□□□□ 10.6
YBX3P16989 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC20.45■□□□□ 0.866e-6■□□□□ 10.6
YBX3P16989 ECE1-210ENST00000526194 2172 ntTSL 1 (best)20.33■□□□□ 0.856e-6■□□□□ 10.6
YBX3P16989 LYAR-204ENST00000513174 780 ntAPPRIS ALT2 TSL 320.31■□□□□ 0.846e-6■□□□□ 10.6
YBX3P16989 FAM3A-206ENST00000412894 832 ntTSL 520.21■□□□□ 0.836e-6■□□□□ 10.6
YBX3P16989 NECTIN2-206ENST00000592018 812 ntTSL 319.9■□□□□ 0.786e-6■□□□□ 10.6
YBX3P16989 SLC48A1-203ENST00000461620 459 ntTSL 419.85■□□□□ 0.773e-12■□□□□ 10.6
YBX3P16989 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.766e-6■□□□□ 10.6
YBX3P16989 FAM3A-209ENST00000421517 853 ntTSL 319.27■□□□□ 0.686e-6■□□□□ 10.6
YBX3P16989 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.16■□□□□ 0.666e-6■□□□□ 10.6
YBX3P16989 SLC48A1-204ENST00000476104 567 ntTSL 419.13■□□□□ 0.653e-12■□□□□ 10.6
YBX3P16989 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.653e-23■□□□□ 10.6
YBX3P16989 FAM3A-213ENST00000440318 441 ntTSL 519.08■□□□□ 0.646e-6■□□□□ 10.6
YBX3P16989 SMAD3-206ENST00000558739 586 ntTSL 317.72■□□□□ 0.436e-6■□□□□ 10.6
YBX3P16989 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC17.71■□□□□ 0.426e-6■□□□□ 10.6
YBX3P16989 BIN3-204ENST00000519335 893 ntTSL 317.47■□□□□ 0.396e-6■□□□□ 10.6
YBX3P16989 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.44■□□□□ 0.386e-6■□□□□ 10.6
YBX3P16989 SMAD3-213ENST00000560175 542 ntTSL 417.36■□□□□ 0.376e-6■□□□□ 10.6
YBX3P16989 INTS14-210ENST00000567923 584 ntTSL 1 (best)17.25■□□□□ 0.356e-6■□□□□ 10.6
YBX3P16989 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.346e-6■□□□□ 10.6
YBX3P16989 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.246e-6■□□□□ 10.6
YBX3P16989 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.34■□□□□ 0.216e-6■□□□□ 10.6
YBX3P16989 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.196e-6■□□□□ 10.6
YBX3P16989 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.116e-6■□□□□ 10.6
YBX3P16989 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.076e-6■□□□□ 10.6
YBX3P16989 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.47■□□□□ 0.073e-23■□□□□ 10.6
YBX3P16989 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.056e-6■□□□□ 10.6
YBX3P16989 ATP13A1-207ENST00000473243 4729 ntTSL 215.19■□□□□ 0.026e-6■□□□□ 10.6
YBX3P16989 MESD-203ENST00000559537 539 ntTSL 415.11■□□□□ 0.016e-6■□□□□ 10.6
YBX3P16989 SMAD3-204ENST00000540846 1567 ntTSL 1 (best) BASIC15.02□□□□□ -0.016e-6■□□□□ 10.6
YBX3P16989 INTS14-213ENST00000569004 806 ntTSL 314.99□□□□□ -0.016e-6■□□□□ 10.6
YBX3P16989 ATP13A1-214ENST00000497556 2442 ntTSL 214.73□□□□□ -0.056e-6■□□□□ 10.6
YBX3P16989 UTP4-207ENST00000566227 747 ntTSL 314.4□□□□□ -0.17e-7■□□□□ 10.6
YBX3P16989 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.116e-6■□□□□ 10.6
YBX3P16989 INTS14-203ENST00000431261 1980 ntTSL 2 BASIC14.34□□□□□ -0.116e-6■□□□□ 10.6
YBX3P16989 SMAD3-211ENST00000559460 568 ntTSL 414.3□□□□□ -0.126e-6■□□□□ 10.6
YBX3P16989 INTS14-202ENST00000420799 1741 ntTSL 2 BASIC14.27□□□□□ -0.136e-6■□□□□ 10.6
YBX3P16989 DHX37-203ENST00000539298 4550 ntTSL 1 (best)14.06□□□□□ -0.166e-6■□□□□ 10.6
YBX3P16989 PTGES3-206ENST00000537473 2939 ntTSL 214.03□□□□□ -0.163e-23■□□□□ 10.6
YBX3P16989 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.196e-6■□□□□ 10.6
YBX3P16989 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.26e-6■□□□□ 10.6
YBX3P16989 MESD-204ENST00000560189 936 ntTSL 513.69□□□□□ -0.226e-6■□□□□ 10.6
YBX3P16989 MESD-206ENST00000561312 2938 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.226e-6■□□□□ 10.6
YBX3P16989 LYAR-202ENST00000452476 1468 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.296e-6■□□□□ 10.6
YBX3P16989 SMAD3-202ENST00000439724 1530 ntTSL 1 (best) BASIC12.97□□□□□ -0.336e-6■□□□□ 10.6
YBX3P16989 INTS14-208ENST00000564306 985 ntTSL 1 (best)12.8□□□□□ -0.366e-6■□□□□ 10.6
YBX3P16989 RNGTT-202ENST00000369485 4553 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.416e-6■□□□□ 10.6
YBX3P16989 ZNF629-201ENST00000262525 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.456e-6■□□□□ 10.6
YBX3P16989 TPP2-201ENST00000376052 5447 ntTSL 5 BASIC12.17□□□□□ -0.466e-6■□□□□ 10.6
YBX3P16989 ARMT1-204ENST00000545879 2495 ntTSL 2 BASIC12.03□□□□□ -0.486e-6■□□□□ 10.6
YBX3P16989 PPT1-209ENST00000530076 1872 ntTSL 2 BASIC11.69□□□□□ -0.542e-10■□□□□ 10.6
YBX3P16989 MESD-207ENST00000619987 3978 ntTSL 1 (best)11.62□□□□□ -0.556e-6■□□□□ 10.6
YBX3P16989 DHX37-206ENST00000544745 4112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.576e-6■□□□□ 10.6
YBX3P16989 ATP13A1-201ENST00000291503 3483 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.616e-6■□□□□ 10.6
YBX3P16989 INTS14-215ENST00000569491 1797 ntTSL 2 BASIC11.18□□□□□ -0.626e-6■□□□□ 10.6
YBX3P16989 RFWD3-209ENST00000575154 547 ntTSL 311.05□□□□□ -0.646e-6■□□□□ 10.6
YBX3P16989 KAT7-202ENST00000424009 3469 ntTSL 1 (best) BASIC11.03□□□□□ -0.646e-6■□□□□ 10.6
YBX3P16989 BIN3-208ENST00000520489 3589 ntTSL 211□□□□□ -0.656e-6■□□□□ 10.6
YBX3P16989 TMEM237-208ENST00000466839 839 ntTSL 510.98□□□□□ -0.656e-6■□□□□ 10.6
YBX3P16989 ECE1-202ENST00000357071 3763 ntTSL 1 (best) BASIC10.96□□□□□ -0.656e-6■□□□□ 10.6
YBX3P16989 GALNT10-204ENST00000517958 3149 ntTSL 1 (best)10.95□□□□□ -0.666e-6■□□□□ 10.6
YBX3P16989 ATP13A1-205ENST00000469641 4241 ntTSL 210.95□□□□□ -0.666e-6■□□□□ 10.6
YBX3P16989 ARMT1-201ENST00000367294 2576 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.76e-6■□□□□ 10.6
YBX3P16989 TMEM237-203ENST00000409883 5415 ntAPPRIS P4 TSL 5 BASIC10.34□□□□□ -0.756e-6■□□□□ 10.6
YBX3P16989 ECE1-207ENST00000470394 486 ntTSL 29.96□□□□□ -0.826e-6■□□□□ 10.6
YBX3P16989 TMED5-205ENST00000483033 3959 ntTSL 29.66□□□□□ -0.866e-6■□□□□ 10.6
YBX3P16989 TPP2-202ENST00000376065 3931 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.896e-6■□□□□ 10.6
YBX3P16989 SMAD3-212ENST00000559937 579 ntTSL 48.86□□□□□ -0.996e-6■□□□□ 10.6
YBX3P16989 MED1-202ENST00000394287 2870 ntTSL 1 (best) BASIC8.75□□□□□ -1.016e-6■□□□□ 10.6
YBX3P16989 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.056e-6■□□□□ 10.6
YBX3P16989 AC245060.4-201ENST00000413293 1121 ntBASIC8.47□□□□□ -1.056e-6■□□□□ 10.6
YBX3P16989 PRPF8-210ENST00000574217 310 ntTSL 28.4□□□□□ -1.066e-6■□□□□ 10.6
YBX3P16989 TMEM237-209ENST00000471318 828 ntTSL 37.78□□□□□ -1.166e-6■□□□□ 10.6
YBX3P16989 SMAD3-209ENST00000558894 797 ntTSL 57.59□□□□□ -1.196e-6■□□□□ 10.6
Retrieved 100 of 29,075 protein–RNA pairs in 249.6 ms