Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 DOC2GP-202ENST00000514950 1163 ntBASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC20.57■□□□□ 0.88
PDZRN3Q9UPQ7 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 CDC14C-201ENST00000428251 1719 ntBASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 AC112504.1-201ENST00000623415 1841 ntBASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 MIR1909-201ENST00000411312 80 ntBASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 MEP1AP4-201ENST00000423244 1087 ntBASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDZRN3Q9UPQ7 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 HLA-DQB2-231ENST00000435145 2026 ntBASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 GNAQP1-201ENST00000444815 1067 ntBASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 SERBP1P3-201ENST00000459980 809 ntBASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 KRT17P8-201ENST00000540749 863 ntBASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 RAB43P1-201ENST00000561790 589 ntBASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 AC020765.3-201ENST00000613051 740 ntBASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDZRN3Q9UPQ7 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 AC005622.1-201ENST00000636801 1703 ntBASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 SPDYE19P-201ENST00000338590 713 ntBASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 AC114501.2-201ENST00000439631 535 ntBASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 RNA5SP410-201ENST00000516285 106 ntBASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 AC132938.2-201ENST00000579188 680 ntBASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 AL591163.1-201ENST00000641757 987 ntBASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC20.54■□□□□ 0.88
PDZRN3Q9UPQ7 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms