Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
KRT39Q6A163 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.23■□□□□ 0.35
KRT39Q6A163 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.23■□□□□ 0.35
KRT39Q6A163 AZGP1P1-201ENST00000411909 902 ntBASIC17.23■□□□□ 0.35
KRT39Q6A163 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.23■□□□□ 0.35
KRT39Q6A163 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
KRT39Q6A163 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.23■□□□□ 0.35
KRT39Q6A163 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.23■□□□□ 0.35
KRT39Q6A163 MIR4313-201ENST00000580760 101 ntBASIC17.23■□□□□ 0.35
KRT39Q6A163 AC093028.1-201ENST00000622998 982 ntBASIC17.23■□□□□ 0.35
KRT39Q6A163 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.23■□□□□ 0.35
KRT39Q6A163 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
KRT39Q6A163 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
KRT39Q6A163 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
KRT39Q6A163 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
KRT39Q6A163 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.23■□□□□ 0.35
KRT39Q6A163 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
KRT39Q6A163 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
KRT39Q6A163 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
KRT39Q6A163 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.22■□□□□ 0.35
KRT39Q6A163 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.22■□□□□ 0.35
KRT39Q6A163 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
KRT39Q6A163 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.22■□□□□ 0.35
KRT39Q6A163 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 CICP13-201ENST00000422015 2789 ntBASIC17.22■□□□□ 0.35
KRT39Q6A163 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
KRT39Q6A163 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
KRT39Q6A163 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
KRT39Q6A163 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.22■□□□□ 0.35
KRT39Q6A163 HIST3H2BA-201ENST00000436555 524 ntBASIC17.22■□□□□ 0.35
KRT39Q6A163 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.22■□□□□ 0.35
KRT39Q6A163 KLF2P3-201ENST00000451977 1087 ntBASIC17.22■□□□□ 0.35
KRT39Q6A163 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
KRT39Q6A163 AC125807.1-201ENST00000483097 614 ntBASIC17.22■□□□□ 0.35
KRT39Q6A163 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.22■□□□□ 0.35
KRT39Q6A163 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.22■□□□□ 0.35
KRT39Q6A163 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.22■□□□□ 0.35
KRT39Q6A163 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.22■□□□□ 0.35
KRT39Q6A163 AC051619.7-201ENST00000568314 623 ntBASIC17.22■□□□□ 0.35
KRT39Q6A163 GPALPP1-207ENST00000611650 899 ntBASIC17.22■□□□□ 0.35
KRT39Q6A163 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.22■□□□□ 0.35
KRT39Q6A163 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.22■□□□□ 0.35
KRT39Q6A163 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
KRT39Q6A163 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
KRT39Q6A163 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
KRT39Q6A163 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
KRT39Q6A163 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
KRT39Q6A163 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
KRT39Q6A163 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.21■□□□□ 0.35
KRT39Q6A163 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.21■□□□□ 0.35
KRT39Q6A163 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
KRT39Q6A163 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.21■□□□□ 0.35
KRT39Q6A163 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
KRT39Q6A163 METTL21AP1-201ENST00000438852 635 ntBASIC17.21■□□□□ 0.35
KRT39Q6A163 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.21■□□□□ 0.35
KRT39Q6A163 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.21■□□□□ 0.35
KRT39Q6A163 HLA-V-204ENST00000476601 1289 ntBASIC17.21■□□□□ 0.35
KRT39Q6A163 AC067863.1-201ENST00000494933 530 ntBASIC17.21■□□□□ 0.35
KRT39Q6A163 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.21■□□□□ 0.35
KRT39Q6A163 HNRNPUP1-201ENST00000554987 333 ntBASIC17.21■□□□□ 0.35
KRT39Q6A163 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.21■□□□□ 0.35
KRT39Q6A163 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.21■□□□□ 0.35
KRT39Q6A163 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.21■□□□□ 0.35
KRT39Q6A163 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.35
KRT39Q6A163 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.21■□□□□ 0.35
KRT39Q6A163 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.21■□□□□ 0.35
KRT39Q6A163 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
KRT39Q6A163 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
KRT39Q6A163 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms