Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.19■□□□□ 0.18
COL6A3P12111 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A3P12111 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
COL6A3P12111 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
COL6A3P12111 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.19■□□□□ 0.18
COL6A3P12111 MIR4522-201ENST00000584932 87 ntBASIC16.19■□□□□ 0.18
COL6A3P12111 AL132994.2-201ENST00000603120 687 ntBASIC16.19■□□□□ 0.18
COL6A3P12111 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A3P12111 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A3P12111 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A3P12111 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A3P12111 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.19■□□□□ 0.18
COL6A3P12111 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A3P12111 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A3P12111 RNU1-114P-201ENST00000365297 166 ntBASIC16.19■□□□□ 0.18
COL6A3P12111 RPL14-203ENST00000416518 812 ntTSL 3 BASIC16.19■□□□□ 0.18
COL6A3P12111 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.19■□□□□ 0.18
COL6A3P12111 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A3P12111 RCC2P8-201ENST00000502779 1035 ntBASIC16.19■□□□□ 0.18
COL6A3P12111 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC16.19■□□□□ 0.18
COL6A3P12111 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC16.19■□□□□ 0.18
COL6A3P12111 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 KRT8P29-201ENST00000420409 1371 ntBASIC16.19■□□□□ 0.18
COL6A3P12111 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A3P12111 AC005622.1-201ENST00000636801 1703 ntBASIC16.19■□□□□ 0.18
COL6A3P12111 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC16.18■□□□□ 0.18
COL6A3P12111 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.18■□□□□ 0.18
COL6A3P12111 AL391280.1-201ENST00000506969 1062 ntBASIC16.18■□□□□ 0.18
COL6A3P12111 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A3P12111 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.18■□□□□ 0.18
COL6A3P12111 EMC4-208ENST00000559078 599 ntTSL 3 BASIC16.18■□□□□ 0.18
COL6A3P12111 AC093752.3-201ENST00000567343 901 ntBASIC16.18■□□□□ 0.18
COL6A3P12111 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC16.18■□□□□ 0.18
COL6A3P12111 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.18■□□□□ 0.18
COL6A3P12111 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A3P12111 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
COL6A3P12111 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
COL6A3P12111 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.18■□□□□ 0.18
COL6A3P12111 GCSHP3-201ENST00000431120 391 ntBASIC16.18■□□□□ 0.18
COL6A3P12111 AC010900.1-201ENST00000449849 1296 ntBASIC16.18■□□□□ 0.18
COL6A3P12111 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.18■□□□□ 0.18
COL6A3P12111 TPM1-223ENST00000560445 485 ntTSL 3 BASIC16.18■□□□□ 0.18
COL6A3P12111 AC026803.1-201ENST00000569130 274 ntBASIC16.18■□□□□ 0.18
COL6A3P12111 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A3P12111 SIGLEC20P-201ENST00000595243 1311 ntBASIC16.18■□□□□ 0.18
COL6A3P12111 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A3P12111 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL6A3P12111 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A3P12111 GAPDHP40-201ENST00000505218 1006 ntBASIC16.18■□□□□ 0.18
COL6A3P12111 AC142086.5-202ENST00000562500 217 ntBASIC16.18■□□□□ 0.18
COL6A3P12111 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
COL6A3P12111 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A3P12111 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A3P12111 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC16.17■□□□□ 0.18
COL6A3P12111 AL645933.1-201ENST00000440087 609 ntBASIC16.17■□□□□ 0.18
COL6A3P12111 CHCHD2P2-201ENST00000503744 321 ntBASIC16.17■□□□□ 0.18
COL6A3P12111 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC16.17■□□□□ 0.18
COL6A3P12111 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC16.17■□□□□ 0.18
COL6A3P12111 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.17■□□□□ 0.18
COL6A3P12111 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
COL6A3P12111 AC107464.3-201ENST00000609172 737 ntBASIC16.17■□□□□ 0.18
COL6A3P12111 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A3P12111 AC136759.1-202ENST00000530858 2194 ntBASIC16.17■□□□□ 0.18
COL6A3P12111 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
COL6A3P12111 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A3P12111 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A3P12111 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A3P12111 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL6A3P12111 PP12613-201ENST00000424958 2230 ntBASIC16.17■□□□□ 0.18
COL6A3P12111 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL6A3P12111 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A3P12111 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms