Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HOXD4P09016 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HOXD4P09016 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD4P09016 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.54□□□□□ -0.08
HOXD4P09016 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.54□□□□□ -0.08
HOXD4P09016 RN7SL692P-201ENST00000464677 288 ntBASIC14.54□□□□□ -0.08
HOXD4P09016 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.54□□□□□ -0.08
HOXD4P09016 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD4P09016 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
HOXD4P09016 AC061975.2-201ENST00000581722 295 ntBASIC14.54□□□□□ -0.08
HOXD4P09016 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD4P09016 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.54□□□□□ -0.08
HOXD4P09016 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
HOXD4P09016 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
HOXD4P09016 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
HOXD4P09016 AL645728.1-201ENST00000366221 2101 ntBASIC14.54□□□□□ -0.08
HOXD4P09016 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD4P09016 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
HOXD4P09016 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXD4P09016 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC14.53□□□□□ -0.08
HOXD4P09016 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXD4P09016 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXD4P09016 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
HOXD4P09016 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXD4P09016 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
HOXD4P09016 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXD4P09016 SPDYE17-201ENST00000412399 783 ntBASIC14.53□□□□□ -0.08
HOXD4P09016 COX5BP8-201ENST00000416911 349 ntBASIC14.53□□□□□ -0.08
HOXD4P09016 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.53□□□□□ -0.08
HOXD4P09016 AL353779.1-201ENST00000434793 351 ntBASIC14.53□□□□□ -0.08
HOXD4P09016 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.53□□□□□ -0.08
HOXD4P09016 SPTLC1P1-201ENST00000447199 261 ntBASIC14.53□□□□□ -0.08
HOXD4P09016 AL139010.1-201ENST00000454878 894 ntBASIC14.53□□□□□ -0.08
HOXD4P09016 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXD4P09016 RN7SL618P-201ENST00000477850 296 ntBASIC14.53□□□□□ -0.08
HOXD4P09016 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.53□□□□□ -0.08
HOXD4P09016 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXD4P09016 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
HOXD4P09016 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.53□□□□□ -0.08
HOXD4P09016 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
HOXD4P09016 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
HOXD4P09016 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
HOXD4P09016 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 AL031731.1-201ENST00000642131 2094 ntBASIC14.53□□□□□ -0.08
HOXD4P09016 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
HOXD4P09016 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD4P09016 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD4P09016 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD4P09016 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD4P09016 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD4P09016 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD4P09016 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.52□□□□□ -0.08
HOXD4P09016 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD4P09016 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.52□□□□□ -0.08
HOXD4P09016 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.52□□□□□ -0.08
HOXD4P09016 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
HOXD4P09016 KRT8P12-202ENST00000472924 1397 ntBASIC14.52□□□□□ -0.08
HOXD4P09016 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
HOXD4P09016 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.52□□□□□ -0.08
HOXD4P09016 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.52□□□□□ -0.08
HOXD4P09016 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD4P09016 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD4P09016 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms