Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NR1H4Q96RI1 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NR1H4Q96RI1 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC22.05■■□□□ 1.12
NR1H4Q96RI1 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC22.05■■□□□ 1.12
NR1H4Q96RI1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
NR1H4Q96RI1 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.05■■□□□ 1.12
NR1H4Q96RI1 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
NR1H4Q96RI1 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NR1H4Q96RI1 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
NR1H4Q96RI1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NR1H4Q96RI1 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC22.04■■□□□ 1.12
NR1H4Q96RI1 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.04■■□□□ 1.12
NR1H4Q96RI1 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.04■■□□□ 1.12
NR1H4Q96RI1 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NR1H4Q96RI1 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.03■■□□□ 1.12
NR1H4Q96RI1 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NR1H4Q96RI1 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NR1H4Q96RI1 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.03■■□□□ 1.12
NR1H4Q96RI1 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NR1H4Q96RI1 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NR1H4Q96RI1 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NR1H4Q96RI1 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NR1H4Q96RI1 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NR1H4Q96RI1 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
NR1H4Q96RI1 AC007375.3-201ENST00000600936 2314 ntBASIC22■■□□□ 1.11
NR1H4Q96RI1 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NR1H4Q96RI1 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
NR1H4Q96RI1 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22■■□□□ 1.11
NR1H4Q96RI1 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22■■□□□ 1.11
NR1H4Q96RI1 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NR1H4Q96RI1 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.99■■□□□ 1.11
NR1H4Q96RI1 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NR1H4Q96RI1 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.99■■□□□ 1.11
NR1H4Q96RI1 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NR1H4Q96RI1 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NR1H4Q96RI1 SLC6A10P-202ENST00000431994 2058 ntBASIC21.99■■□□□ 1.11
NR1H4Q96RI1 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NR1H4Q96RI1 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NR1H4Q96RI1 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.98■■□□□ 1.11
NR1H4Q96RI1 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NR1H4Q96RI1 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NR1H4Q96RI1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
NR1H4Q96RI1 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.97■■□□□ 1.11
NR1H4Q96RI1 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
NR1H4Q96RI1 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NR1H4Q96RI1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.96■■□□□ 1.11
NR1H4Q96RI1 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NR1H4Q96RI1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.96■■□□□ 1.11
NR1H4Q96RI1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NR1H4Q96RI1 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
NR1H4Q96RI1 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
NR1H4Q96RI1 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NR1H4Q96RI1 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
NR1H4Q96RI1 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NR1H4Q96RI1 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NR1H4Q96RI1 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NR1H4Q96RI1 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 538.5 ms