Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL451085.2-201ENST00000605085 799 ntBASIC22.12■■□□□ 1.13
PTCHD1Q96NR3 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.12■■□□□ 1.13
PTCHD1Q96NR3 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.12■■□□□ 1.13
PTCHD1Q96NR3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD1Q96NR3 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD1Q96NR3 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.11■■□□□ 1.13
PTCHD1Q96NR3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD1Q96NR3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD1Q96NR3 THA1P-201ENST00000590384 1145 ntBASIC22.11■■□□□ 1.13
PTCHD1Q96NR3 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD1Q96NR3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.11■■□□□ 1.13
PTCHD1Q96NR3 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCHD1Q96NR3 AC120024.1-201ENST00000562672 995 ntBASIC22.1■■□□□ 1.13
PTCHD1Q96NR3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCHD1Q96NR3 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCHD1Q96NR3 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC22.09■■□□□ 1.13
PTCHD1Q96NR3 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
PTCHD1Q96NR3 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
PTCHD1Q96NR3 TK2-216ENST00000564917 1156 ntTSL 3 BASIC22.09■■□□□ 1.13
PTCHD1Q96NR3 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PTCHD1Q96NR3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCHD1Q96NR3 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC22.09■■□□□ 1.13
PTCHD1Q96NR3 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD1Q96NR3 SLC6A10P-202ENST00000431994 2058 ntBASIC22.08■■□□□ 1.13
PTCHD1Q96NR3 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC22.08■■□□□ 1.13
PTCHD1Q96NR3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.08■■□□□ 1.13
PTCHD1Q96NR3 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD1Q96NR3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.08■■□□□ 1.13
PTCHD1Q96NR3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.08■■□□□ 1.12
PTCHD1Q96NR3 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD1Q96NR3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD1Q96NR3 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD1Q96NR3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD1Q96NR3 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD1Q96NR3 PRTG-204ENST00000561292 833 ntTSL 3 BASIC22.07■■□□□ 1.12
PTCHD1Q96NR3 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD1Q96NR3 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC22.06■■□□□ 1.12
PTCHD1Q96NR3 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
PTCHD1Q96NR3 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PTCHD1Q96NR3 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PTCHD1Q96NR3 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PTCHD1Q96NR3 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PTCHD1Q96NR3 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
PTCHD1Q96NR3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD1Q96NR3 AC009299.2-201ENST00000482477 511 ntBASIC22.05■■□□□ 1.12
PTCHD1Q96NR3 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD1Q96NR3 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC22.05■■□□□ 1.12
PTCHD1Q96NR3 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD1Q96NR3 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTCHD1Q96NR3 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 AC011551.1-201ENST00000614101 683 ntBASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 AL035685.1-201ENST00000636663 812 ntBASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTCHD1Q96NR3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.03■■□□□ 1.12
PTCHD1Q96NR3 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTCHD1Q96NR3 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.03■■□□□ 1.12
PTCHD1Q96NR3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
PTCHD1Q96NR3 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC22.03■■□□□ 1.12
PTCHD1Q96NR3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
PTCHD1Q96NR3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.12
PTCHD1Q96NR3 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC22.02■■□□□ 1.12
PTCHD1Q96NR3 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC22.02■■□□□ 1.12
PTCHD1Q96NR3 GAK-223ENST00000628912 497 ntTSL 5 BASIC22.02■■□□□ 1.12
PTCHD1Q96NR3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
PTCHD1Q96NR3 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.02■■□□□ 1.11
PTCHD1Q96NR3 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD1Q96NR3 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD1Q96NR3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD1Q96NR3 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
PTCHD1Q96NR3 AC090877.2-201ENST00000558441 1738 ntBASIC22.01■■□□□ 1.11
PTCHD1Q96NR3 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD1Q96NR3 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.01■■□□□ 1.11
PTCHD1Q96NR3 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
PTCHD1Q96NR3 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PTCHD1Q96NR3 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTCHD1Q96NR3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTCHD1Q96NR3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22■■□□□ 1.11
PTCHD1Q96NR3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22■■□□□ 1.11
PTCHD1Q96NR3 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTCHD1Q96NR3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
PTCHD1Q96NR3 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22■■□□□ 1.11
PTCHD1Q96NR3 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22■■□□□ 1.11
PTCHD1Q96NR3 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD1Q96NR3 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD1Q96NR3 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
PTCHD1Q96NR3 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD1Q96NR3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD1Q96NR3 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.99■■□□□ 1.11
PTCHD1Q96NR3 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD1Q96NR3 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTCHD1Q96NR3 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
PTCHD1Q96NR3 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTCHD1Q96NR3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.98■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms