Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNFT1Q5M7Z0 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNFT1Q5M7Z0 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.31■■□□□ 1
RNFT1Q5M7Z0 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.31■■□□□ 1
RNFT1Q5M7Z0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RNFT1Q5M7Z0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.31■■□□□ 1
RNFT1Q5M7Z0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RNFT1Q5M7Z0 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
RNFT1Q5M7Z0 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNFT1Q5M7Z0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.3■■□□□ 1
RNFT1Q5M7Z0 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.3■■□□□ 1
RNFT1Q5M7Z0 AC010997.5-201ENST00000609182 354 ntBASIC21.3■■□□□ 1
RNFT1Q5M7Z0 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.3■■□□□ 1
RNFT1Q5M7Z0 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RNFT1Q5M7Z0 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
RNFT1Q5M7Z0 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.3■■□□□ 1
RNFT1Q5M7Z0 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
RNFT1Q5M7Z0 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.29■■□□□ 1
RNFT1Q5M7Z0 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.29■■□□□ 1
RNFT1Q5M7Z0 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
RNFT1Q5M7Z0 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNFT1Q5M7Z0 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNFT1Q5M7Z0 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNFT1Q5M7Z0 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.28■■□□□ 1
RNFT1Q5M7Z0 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RNFT1Q5M7Z0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.28■■□□□ 1
RNFT1Q5M7Z0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.28■■□□□ 1
RNFT1Q5M7Z0 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 AC092803.2-201ENST00000564287 1899 ntBASIC21.27■■□□□ 1
RNFT1Q5M7Z0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RNFT1Q5M7Z0 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 AC090877.2-201ENST00000558441 1738 ntBASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 AC019069.1-201ENST00000610008 1333 ntBASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RNFT1Q5M7Z0 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.25■□□□□ 0.99
RNFT1Q5M7Z0 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNFT1Q5M7Z0 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNFT1Q5M7Z0 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNFT1Q5M7Z0 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RNFT1Q5M7Z0 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RNFT1Q5M7Z0 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.25■□□□□ 0.99
RNFT1Q5M7Z0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
RNFT1Q5M7Z0 MTDHP2-201ENST00000601468 714 ntBASIC21.25■□□□□ 0.99
RNFT1Q5M7Z0 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.25■□□□□ 0.99
RNFT1Q5M7Z0 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 AC131281.2-201ENST00000520478 145 ntBASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 AL117332.1-201ENST00000622628 974 ntBASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNFT1Q5M7Z0 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 MIR6724-1-201ENST00000616420 92 ntBASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 MIR6724-2-201ENST00000616483 92 ntBASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 MIR6724-4-201ENST00000617390 92 ntBASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 MIR6724-3-201ENST00000622482 92 ntBASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
RNFT1Q5M7Z0 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
RNFT1Q5M7Z0 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.22■□□□□ 0.99
RNFT1Q5M7Z0 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.22■□□□□ 0.99
RNFT1Q5M7Z0 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.22■□□□□ 0.99
RNFT1Q5M7Z0 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.22■□□□□ 0.99
RNFT1Q5M7Z0 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNFT1Q5M7Z0 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNFT1Q5M7Z0 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNFT1Q5M7Z0 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNFT1Q5M7Z0 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms