Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC58Q4VC31 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC58Q4VC31 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.83■□□□□ 0.93
CCDC58Q4VC31 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC58Q4VC31 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC58Q4VC31 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC58Q4VC31 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC58Q4VC31 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC58Q4VC31 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC58Q4VC31 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC58Q4VC31 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.92
CCDC58Q4VC31 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC58Q4VC31 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC58Q4VC31 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC58Q4VC31 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC58Q4VC31 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC58Q4VC31 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC58Q4VC31 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC58Q4VC31 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CCDC58Q4VC31 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CCDC58Q4VC31 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC58Q4VC31 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC58Q4VC31 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC58Q4VC31 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC58Q4VC31 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC58Q4VC31 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC58Q4VC31 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC58Q4VC31 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC58Q4VC31 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC58Q4VC31 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC58Q4VC31 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC58Q4VC31 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC58Q4VC31 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC58Q4VC31 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC58Q4VC31 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC58Q4VC31 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC58Q4VC31 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC58Q4VC31 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC58Q4VC31 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC58Q4VC31 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC58Q4VC31 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC58Q4VC31 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC58Q4VC31 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC58Q4VC31 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC58Q4VC31 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCDC58Q4VC31 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC58Q4VC31 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC58Q4VC31 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC58Q4VC31 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC58Q4VC31 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC58Q4VC31 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC58Q4VC31 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC58Q4VC31 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC58Q4VC31 MIR6089-201ENST00000616698 64 ntBASIC20.77■□□□□ 0.92
CCDC58Q4VC31 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC58Q4VC31 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC58Q4VC31 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCDC58Q4VC31 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC58Q4VC31 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC58Q4VC31 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC58Q4VC31 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC58Q4VC31 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC58Q4VC31 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC58Q4VC31 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CCDC58Q4VC31 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC58Q4VC31 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC58Q4VC31 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC58Q4VC31 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC58Q4VC31 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC58Q4VC31 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC58Q4VC31 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC58Q4VC31 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CCDC58Q4VC31 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC58Q4VC31 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CCDC58Q4VC31 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC58Q4VC31 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC58Q4VC31 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.74■□□□□ 0.91
CCDC58Q4VC31 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC58Q4VC31 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC58Q4VC31 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC58Q4VC31 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC58Q4VC31 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CCDC58Q4VC31 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC58Q4VC31 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC58Q4VC31 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC58Q4VC31 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC58Q4VC31 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC58Q4VC31 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms