Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
MSX2P35548 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.33■■□□□ 1.16
MSX2P35548 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
MSX2P35548 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.33■■□□□ 1.16
MSX2P35548 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
MSX2P35548 NFE2L3P1-201ENST00000588207 1959 ntBASIC22.32■■□□□ 1.16
MSX2P35548 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.32■■□□□ 1.16
MSX2P35548 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSX2P35548 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
MSX2P35548 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC22.32■■□□□ 1.16
MSX2P35548 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.32■■□□□ 1.16
MSX2P35548 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSX2P35548 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSX2P35548 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSX2P35548 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSX2P35548 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSX2P35548 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.31■■□□□ 1.16
MSX2P35548 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSX2P35548 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSX2P35548 HLA-V-202ENST00000446817 847 ntBASIC22.31■■□□□ 1.16
MSX2P35548 DUX4L13-201ENST00000554103 1267 ntBASIC22.31■■□□□ 1.16
MSX2P35548 DUX4L15-201ENST00000611059 1267 ntBASIC22.31■■□□□ 1.16
MSX2P35548 DUX4L23-201ENST00000615195 1269 ntBASIC22.31■■□□□ 1.16
MSX2P35548 DUX4L24-201ENST00000617576 1269 ntBASIC22.31■■□□□ 1.16
MSX2P35548 DUX4L22-201ENST00000618238 1269 ntBASIC22.31■■□□□ 1.16
MSX2P35548 DUX4L20-201ENST00000619712 1269 ntBASIC22.31■■□□□ 1.16
MSX2P35548 DUX4L21-201ENST00000622058 1269 ntBASIC22.31■■□□□ 1.16
MSX2P35548 DUX4L10-201ENST00000622460 1267 ntBASIC22.31■■□□□ 1.16
MSX2P35548 DUX4L25-201ENST00000624915 1269 ntBASIC22.31■■□□□ 1.16
MSX2P35548 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSX2P35548 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
MSX2P35548 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.31■■□□□ 1.16
MSX2P35548 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
MSX2P35548 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.3■■□□□ 1.16
MSX2P35548 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSX2P35548 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSX2P35548 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSX2P35548 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.3■■□□□ 1.16
MSX2P35548 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSX2P35548 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
MSX2P35548 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSX2P35548 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSX2P35548 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSX2P35548 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSX2P35548 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
MSX2P35548 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.29■■□□□ 1.16
MSX2P35548 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSX2P35548 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
MSX2P35548 GALC-202ENST00000393568 2054 ntTSL 2 BASIC22.28■■□□□ 1.16
MSX2P35548 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
MSX2P35548 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.28■■□□□ 1.16
MSX2P35548 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSX2P35548 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSX2P35548 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
MSX2P35548 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
MSX2P35548 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC22.28■■□□□ 1.16
MSX2P35548 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
MSX2P35548 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC22.27■■□□□ 1.16
MSX2P35548 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSX2P35548 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
MSX2P35548 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
MSX2P35548 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSX2P35548 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
MSX2P35548 LINC01971-201ENST00000617888 1048 ntBASIC22.27■■□□□ 1.16
MSX2P35548 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.27■■□□□ 1.16
MSX2P35548 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSX2P35548 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.27■■□□□ 1.16
MSX2P35548 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.27■■□□□ 1.16
MSX2P35548 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.26■■□□□ 1.15
MSX2P35548 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSX2P35548 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSX2P35548 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSX2P35548 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSX2P35548 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSX2P35548 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSX2P35548 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.26■■□□□ 1.15
MSX2P35548 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSX2P35548 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
MSX2P35548 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSX2P35548 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC22.25■■□□□ 1.15
MSX2P35548 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC22.25■■□□□ 1.15
MSX2P35548 HGH1-207ENST00000628266 258 ntTSL 5 BASIC22.25■■□□□ 1.15
MSX2P35548 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSX2P35548 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSX2P35548 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSX2P35548 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC22.24■■□□□ 1.15
MSX2P35548 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSX2P35548 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSX2P35548 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
MSX2P35548 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
MSX2P35548 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSX2P35548 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSX2P35548 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSX2P35548 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSX2P35548 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.23■■□□□ 1.15
MSX2P35548 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSX2P35548 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.23■■□□□ 1.15
MSX2P35548 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.23■■□□□ 1.15
MSX2P35548 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSX2P35548 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms