Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
SHMT1P34896 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC27.78■■■□□ 2.04
SHMT1P34896 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC27.78■■■□□ 2.04
SHMT1P34896 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC27.78■■■□□ 2.04
SHMT1P34896 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC27.78■■■□□ 2.04
SHMT1P34896 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC27.77■■■□□ 2.04
SHMT1P34896 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC27.77■■■□□ 2.04
SHMT1P34896 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC27.77■■■□□ 2.04
SHMT1P34896 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC27.77■■■□□ 2.04
SHMT1P34896 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.77■■■□□ 2.04
SHMT1P34896 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC27.76■■■□□ 2.03
SHMT1P34896 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC27.76■■■□□ 2.03
SHMT1P34896 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC27.76■■■□□ 2.03
SHMT1P34896 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
SHMT1P34896 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC27.76■■■□□ 2.03
SHMT1P34896 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
SHMT1P34896 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
SHMT1P34896 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SHMT1P34896 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SHMT1P34896 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC27.75■■■□□ 2.03
SHMT1P34896 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC27.75■■■□□ 2.03
SHMT1P34896 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC27.75■■■□□ 2.03
SHMT1P34896 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SHMT1P34896 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC27.74■■■□□ 2.03
SHMT1P34896 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
SHMT1P34896 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SHMT1P34896 AC090877.2-201ENST00000558441 1738 ntBASIC27.74■■■□□ 2.03
SHMT1P34896 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SHMT1P34896 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHMT1P34896 MTURN-203ENST00000409688 843 ntTSL 2 BASIC27.73■■■□□ 2.03
SHMT1P34896 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC27.73■■■□□ 2.03
SHMT1P34896 TK2-202ENST00000417693 1046 ntTSL 2 BASIC27.73■■■□□ 2.03
SHMT1P34896 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SHMT1P34896 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SHMT1P34896 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHMT1P34896 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC27.72■■■□□ 2.03
SHMT1P34896 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC27.72■■■□□ 2.03
SHMT1P34896 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC27.72■■■□□ 2.03
SHMT1P34896 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
SHMT1P34896 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHMT1P34896 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
SHMT1P34896 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC27.71■■■□□ 2.03
SHMT1P34896 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
SHMT1P34896 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SHMT1P34896 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC27.71■■■□□ 2.03
SHMT1P34896 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC27.71■■■□□ 2.03
SHMT1P34896 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC27.71■■■□□ 2.03
SHMT1P34896 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC27.7■■■□□ 2.03
SHMT1P34896 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC27.7■■■□□ 2.02
SHMT1P34896 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC27.69■■■□□ 2.02
SHMT1P34896 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SHMT1P34896 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC27.68■■■□□ 2.02
SHMT1P34896 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC27.68■■■□□ 2.02
SHMT1P34896 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC27.68■■■□□ 2.02
SHMT1P34896 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC27.67■■■□□ 2.02
SHMT1P34896 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
SHMT1P34896 AC010997.5-201ENST00000609182 354 ntBASIC27.67■■■□□ 2.02
SHMT1P34896 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC27.66■■■□□ 2.02
SHMT1P34896 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHMT1P34896 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHMT1P34896 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHMT1P34896 LSM4-201ENST00000252816 986 ntTSL 2 BASIC27.66■■■□□ 2.02
SHMT1P34896 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHMT1P34896 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC27.66■■■□□ 2.02
SHMT1P34896 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC27.66■■■□□ 2.02
SHMT1P34896 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHMT1P34896 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC27.65■■■□□ 2.02
SHMT1P34896 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC27.65■■■□□ 2.02
SHMT1P34896 DUSP8P4-201ENST00000399538 1761 ntBASIC27.65■■■□□ 2.02
SHMT1P34896 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
SHMT1P34896 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SHMT1P34896 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC27.64■■■□□ 2.02
SHMT1P34896 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC27.64■■■□□ 2.02
SHMT1P34896 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC27.64■■■□□ 2.02
SHMT1P34896 CLTA-210ENST00000540080 989 ntTSL 2 BASIC27.64■■■□□ 2.02
SHMT1P34896 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHMT1P34896 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC27.63■■■□□ 2.01
SHMT1P34896 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC27.63■■■□□ 2.01
SHMT1P34896 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC27.63■■■□□ 2.01
SHMT1P34896 MTDHP2-201ENST00000601468 714 ntBASIC27.63■■■□□ 2.01
SHMT1P34896 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHMT1P34896 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC27.63■■■□□ 2.01
SHMT1P34896 AC008406.3-201ENST00000620001 1374 ntBASIC27.62■■■□□ 2.01
SHMT1P34896 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC27.62■■■□□ 2.01
SHMT1P34896 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC27.62■■■□□ 2.01
SHMT1P34896 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC27.62■■■□□ 2.01
SHMT1P34896 AC091060.1-201ENST00000623524 1766 ntBASIC27.62■■■□□ 2.01
SHMT1P34896 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC27.61■■■□□ 2.01
SHMT1P34896 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC27.61■■■□□ 2.01
SHMT1P34896 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC27.61■■■□□ 2.01
SHMT1P34896 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
SHMT1P34896 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.6■■■□□ 2.01
SHMT1P34896 AL117332.1-201ENST00000622628 974 ntBASIC27.6■■■□□ 2.01
SHMT1P34896 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SHMT1P34896 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC27.6■■■□□ 2.01
SHMT1P34896 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SHMT1P34896 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
SHMT1P34896 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
SHMT1P34896 MIR6724-1-201ENST00000616420 92 ntBASIC27.59■■■□□ 2.01
SHMT1P34896 MIR6724-2-201ENST00000616483 92 ntBASIC27.59■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms