Protein–RNA interactions for Protein: P27694

RPA1, Replication protein A 70 kDa DNA-binding subunit, humanhuman

Predictions only

Length 616 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1P27694 SSSCA1-AS1-201ENST00000567594 614 ntBASIC26.33■■□□□ 1.81
RPA1P27694 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
RPA1P27694 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RPA1P27694 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
RPA1P27694 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC26.32■■□□□ 1.8
RPA1P27694 MIR6089-201ENST00000616698 64 ntBASIC26.32■■□□□ 1.8
RPA1P27694 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RPA1P27694 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
RPA1P27694 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
RPA1P27694 AC142381.3-201ENST00000568208 1670 ntBASIC26.31■■□□□ 1.8
RPA1P27694 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.31■■□□□ 1.8
RPA1P27694 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
RPA1P27694 YBX1P4-201ENST00000392794 808 ntBASIC26.31■■□□□ 1.8
RPA1P27694 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC26.31■■□□□ 1.8
RPA1P27694 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
RPA1P27694 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC26.3■■□□□ 1.8
RPA1P27694 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC26.3■■□□□ 1.8
RPA1P27694 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.3■■□□□ 1.8
RPA1P27694 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
RPA1P27694 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC26.3■■□□□ 1.8
RPA1P27694 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
RPA1P27694 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.29■■□□□ 1.8
RPA1P27694 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC26.29■■□□□ 1.8
RPA1P27694 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC26.29■■□□□ 1.8
RPA1P27694 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
RPA1P27694 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.29■■□□□ 1.8
RPA1P27694 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
RPA1P27694 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.28■■□□□ 1.8
RPA1P27694 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
RPA1P27694 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.28■■□□□ 1.8
RPA1P27694 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
RPA1P27694 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
RPA1P27694 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC26.28■■□□□ 1.8
RPA1P27694 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RPA1P27694 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
RPA1P27694 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
RPA1P27694 KRT18P24-201ENST00000344739 1156 ntBASIC26.27■■□□□ 1.8
RPA1P27694 RARRES2P1-201ENST00000474487 481 ntBASIC26.27■■□□□ 1.8
RPA1P27694 AC103724.3-201ENST00000564481 992 ntBASIC26.27■■□□□ 1.8
RPA1P27694 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
RPA1P27694 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
RPA1P27694 AC090877.2-201ENST00000558441 1738 ntBASIC26.27■■□□□ 1.8
RPA1P27694 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
RPA1P27694 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
RPA1P27694 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
RPA1P27694 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC26.26■■□□□ 1.79
RPA1P27694 AC011551.1-201ENST00000614101 683 ntBASIC26.26■■□□□ 1.79
RPA1P27694 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
RPA1P27694 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
RPA1P27694 AC138932.3-201ENST00000567634 1902 ntBASIC26.26■■□□□ 1.79
RPA1P27694 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC26.25■■□□□ 1.79
RPA1P27694 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
RPA1P27694 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
RPA1P27694 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
RPA1P27694 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.25■■□□□ 1.79
RPA1P27694 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
RPA1P27694 AC120024.1-201ENST00000562672 995 ntBASIC26.24■■□□□ 1.79
RPA1P27694 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC26.24■■□□□ 1.79
RPA1P27694 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC26.24■■□□□ 1.79
RPA1P27694 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
RPA1P27694 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.23■■□□□ 1.79
RPA1P27694 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RPA1P27694 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC26.23■■□□□ 1.79
RPA1P27694 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.23■■□□□ 1.79
RPA1P27694 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.23■■□□□ 1.79
RPA1P27694 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RPA1P27694 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
RPA1P27694 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
RPA1P27694 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
RPA1P27694 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.22■■□□□ 1.79
RPA1P27694 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
RPA1P27694 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.22■■□□□ 1.79
RPA1P27694 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RPA1P27694 AP003733.4-201ENST00000623785 1697 ntBASIC26.22■■□□□ 1.79
RPA1P27694 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
RPA1P27694 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26.21■■□□□ 1.79
RPA1P27694 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
RPA1P27694 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RPA1P27694 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RPA1P27694 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.21■■□□□ 1.79
RPA1P27694 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.21■■□□□ 1.79
RPA1P27694 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.79
RPA1P27694 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
RPA1P27694 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
RPA1P27694 THA1P-201ENST00000590384 1145 ntBASIC26.2■■□□□ 1.78
RPA1P27694 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
RPA1P27694 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
RPA1P27694 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RPA1P27694 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.19■■□□□ 1.78
RPA1P27694 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RPA1P27694 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
RPA1P27694 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC26.18■■□□□ 1.78
RPA1P27694 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPA1P27694 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPA1P27694 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPA1P27694 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.17■■□□□ 1.78
RPA1P27694 AL031848.2-201ENST00000607670 837 ntBASIC26.17■■□□□ 1.78
RPA1P27694 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.17■■□□□ 1.78
RPA1P27694 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPA1P27694 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms