Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA1O95477 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA1O95477 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA1O95477 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA1O95477 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA1O95477 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.65■□□□□ 0.74
ABCA1O95477 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
ABCA1O95477 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.65■□□□□ 0.74
ABCA1O95477 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ABCA1O95477 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.64■□□□□ 0.74
ABCA1O95477 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.64■□□□□ 0.74
ABCA1O95477 RARRES2P6-201ENST00000567333 442 ntBASIC19.64■□□□□ 0.74
ABCA1O95477 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ABCA1O95477 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ABCA1O95477 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.64■□□□□ 0.73
ABCA1O95477 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ABCA1O95477 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ABCA1O95477 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
ABCA1O95477 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.63■□□□□ 0.73
ABCA1O95477 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.63■□□□□ 0.73
ABCA1O95477 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA1O95477 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA1O95477 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.62■□□□□ 0.73
ABCA1O95477 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA1O95477 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA1O95477 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA1O95477 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA1O95477 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA1O95477 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA1O95477 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ABCA1O95477 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.62■□□□□ 0.73
ABCA1O95477 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.62■□□□□ 0.73
ABCA1O95477 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.62■□□□□ 0.73
ABCA1O95477 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ABCA1O95477 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.61■□□□□ 0.73
ABCA1O95477 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.61■□□□□ 0.73
ABCA1O95477 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ABCA1O95477 AC011551.1-201ENST00000614101 683 ntBASIC19.61■□□□□ 0.73
ABCA1O95477 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ABCA1O95477 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ABCA1O95477 AC106739.1-201ENST00000617035 715 ntBASIC19.6■□□□□ 0.73
ABCA1O95477 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ABCA1O95477 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
ABCA1O95477 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ABCA1O95477 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
ABCA1O95477 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ABCA1O95477 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
ABCA1O95477 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
ABCA1O95477 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
ABCA1O95477 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.59■□□□□ 0.73
ABCA1O95477 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.59■□□□□ 0.73
ABCA1O95477 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.59■□□□□ 0.73
ABCA1O95477 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ABCA1O95477 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ABCA1O95477 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.59■□□□□ 0.73
ABCA1O95477 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC19.59■□□□□ 0.73
ABCA1O95477 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
ABCA1O95477 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
ABCA1O95477 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ABCA1O95477 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ABCA1O95477 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ABCA1O95477 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ABCA1O95477 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.58■□□□□ 0.72
ABCA1O95477 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
ABCA1O95477 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
ABCA1O95477 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.57■□□□□ 0.72
ABCA1O95477 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
ABCA1O95477 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
ABCA1O95477 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ABCA1O95477 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ABCA1O95477 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
ABCA1O95477 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.56■□□□□ 0.72
ABCA1O95477 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.56■□□□□ 0.72
ABCA1O95477 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ABCA1O95477 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.56■□□□□ 0.72
ABCA1O95477 AF131216.4-201ENST00000638924 1588 ntBASIC19.56■□□□□ 0.72
ABCA1O95477 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
ABCA1O95477 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ABCA1O95477 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ABCA1O95477 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ABCA1O95477 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.56■□□□□ 0.72
ABCA1O95477 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA1O95477 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.55■□□□□ 0.72
ABCA1O95477 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA1O95477 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.55■□□□□ 0.72
ABCA1O95477 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA1O95477 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ABCA1O95477 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
ABCA1O95477 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ABCA1O95477 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.54■□□□□ 0.72
ABCA1O95477 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ABCA1O95477 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ABCA1O95477 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC19.54■□□□□ 0.72
ABCA1O95477 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ABCA1O95477 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
ABCA1O95477 AC142381.2-201ENST00000566120 298 ntBASIC19.54■□□□□ 0.72
ABCA1O95477 AL031432.3-201ENST00000607698 485 ntBASIC19.54■□□□□ 0.72
ABCA1O95477 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ABCA1O95477 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
ABCA1O95477 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms