Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SSX4O60224 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SSX4O60224 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SSX4O60224 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX4O60224 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX4O60224 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX4O60224 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX4O60224 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX4O60224 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.07■□□□□ 0.96
SSX4O60224 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX4O60224 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
SSX4O60224 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX4O60224 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SSX4O60224 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX4O60224 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX4O60224 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.06■□□□□ 0.96
SSX4O60224 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SSX4O60224 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.06■□□□□ 0.96
SSX4O60224 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SSX4O60224 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX4O60224 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SSX4O60224 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SSX4O60224 RARRES2P1-201ENST00000474487 481 ntBASIC21.06■□□□□ 0.96
SSX4O60224 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SSX4O60224 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX4O60224 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX4O60224 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX4O60224 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX4O60224 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX4O60224 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX4O60224 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SSX4O60224 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SSX4O60224 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.05■□□□□ 0.96
SSX4O60224 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SSX4O60224 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SSX4O60224 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX4O60224 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX4O60224 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
SSX4O60224 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
SSX4O60224 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SSX4O60224 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX4O60224 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX4O60224 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.04■□□□□ 0.96
SSX4O60224 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.04■□□□□ 0.96
SSX4O60224 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.04■□□□□ 0.96
SSX4O60224 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX4O60224 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX4O60224 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX4O60224 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SSX4O60224 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SSX4O60224 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX4O60224 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX4O60224 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SSX4O60224 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
SSX4O60224 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.02■□□□□ 0.96
SSX4O60224 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SSX4O60224 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.02■□□□□ 0.96
SSX4O60224 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.02■□□□□ 0.96
SSX4O60224 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SSX4O60224 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SSX4O60224 AC010501.1-201ENST00000606270 1962 ntBASIC21.01■□□□□ 0.95
SSX4O60224 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.01■□□□□ 0.95
SSX4O60224 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX4O60224 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SSX4O60224 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.01■□□□□ 0.95
SSX4O60224 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.01■□□□□ 0.95
SSX4O60224 AC026202.3-201ENST00000600805 1127 ntBASIC21.01■□□□□ 0.95
SSX4O60224 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SSX4O60224 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX4O60224 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.01■□□□□ 0.95
SSX4O60224 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SSX4O60224 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.01■□□□□ 0.95
SSX4O60224 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX4O60224 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21■□□□□ 0.95
SSX4O60224 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SSX4O60224 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
SSX4O60224 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21■□□□□ 0.95
SSX4O60224 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SSX4O60224 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21■□□□□ 0.95
SSX4O60224 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SSX4O60224 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SSX4O60224 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21■□□□□ 0.95
SSX4O60224 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SSX4O60224 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SSX4O60224 LINC01124-201ENST00000409786 2117 ntBASIC20.99■□□□□ 0.95
SSX4O60224 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SSX4O60224 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SSX4O60224 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SSX4O60224 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SSX4O60224 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.99■□□□□ 0.95
SSX4O60224 AC097639.1-201ENST00000565519 1891 ntBASIC20.99■□□□□ 0.95
SSX4O60224 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SSX4O60224 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.99■□□□□ 0.95
SSX4O60224 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SSX4O60224 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SSX4O60224 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SSX4O60224 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.99■□□□□ 0.95
SSX4O60224 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SSX4O60224 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SSX4O60224 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms