Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC33.4■■■□□ 2.94
PCDHA1Q9Y5I3 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC33.38■■■□□ 2.93
PCDHA1Q9Y5I3 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
PCDHA1Q9Y5I3 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
PCDHA1Q9Y5I3 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
PCDHA1Q9Y5I3 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC33.34■■■□□ 2.93
PCDHA1Q9Y5I3 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC33.34■■■□□ 2.93
PCDHA1Q9Y5I3 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC33.34■■■□□ 2.93
PCDHA1Q9Y5I3 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC33.34■■■□□ 2.93
PCDHA1Q9Y5I3 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC33.27■■■□□ 2.92
PCDHA1Q9Y5I3 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
PCDHA1Q9Y5I3 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
PCDHA1Q9Y5I3 AC145285.7-201ENST00000614819 1539 ntBASIC33.23■■■□□ 2.91
PCDHA1Q9Y5I3 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
PCDHA1Q9Y5I3 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC33.2■■■□□ 2.91
PCDHA1Q9Y5I3 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC33.19■■■□□ 2.9
PCDHA1Q9Y5I3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC33.19■■■□□ 2.9
PCDHA1Q9Y5I3 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC33.18■■■□□ 2.9
PCDHA1Q9Y5I3 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.18■■■□□ 2.9
PCDHA1Q9Y5I3 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
PCDHA1Q9Y5I3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC33.17■■■□□ 2.9
PCDHA1Q9Y5I3 AL031258.1-201ENST00000623562 325 ntBASIC33.17■■■□□ 2.9
PCDHA1Q9Y5I3 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC33.17■■■□□ 2.9
PCDHA1Q9Y5I3 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC33.16■■■□□ 2.9
PCDHA1Q9Y5I3 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC33.16■■■□□ 2.9
PCDHA1Q9Y5I3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC33.14■■■□□ 2.9
PCDHA1Q9Y5I3 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC33.13■■■□□ 2.89
PCDHA1Q9Y5I3 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC33.11■■■□□ 2.89
PCDHA1Q9Y5I3 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
PCDHA1Q9Y5I3 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
PCDHA1Q9Y5I3 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
PCDHA1Q9Y5I3 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
PCDHA1Q9Y5I3 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC33.06■■■□□ 2.88
PCDHA1Q9Y5I3 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
PCDHA1Q9Y5I3 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC33.02■■■□□ 2.88
PCDHA1Q9Y5I3 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
PCDHA1Q9Y5I3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
PCDHA1Q9Y5I3 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC32.94■■■□□ 2.86
PCDHA1Q9Y5I3 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
PCDHA1Q9Y5I3 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.93■■■□□ 2.86
PCDHA1Q9Y5I3 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.89■■■□□ 2.86
PCDHA1Q9Y5I3 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC32.88■■■□□ 2.85
PCDHA1Q9Y5I3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.84■■■□□ 2.85
PCDHA1Q9Y5I3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.84■■■□□ 2.85
PCDHA1Q9Y5I3 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
PCDHA1Q9Y5I3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC32.8■■■□□ 2.84
PCDHA1Q9Y5I3 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC32.8■■■□□ 2.84
PCDHA1Q9Y5I3 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC32.79■■■□□ 2.84
PCDHA1Q9Y5I3 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC32.77■■■□□ 2.84
PCDHA1Q9Y5I3 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.76■■■□□ 2.83
PCDHA1Q9Y5I3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
PCDHA1Q9Y5I3 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
PCDHA1Q9Y5I3 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
PCDHA1Q9Y5I3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC32.74■■■□□ 2.83
PCDHA1Q9Y5I3 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC32.73■■■□□ 2.83
PCDHA1Q9Y5I3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC32.71■■■□□ 2.83
PCDHA1Q9Y5I3 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
PCDHA1Q9Y5I3 MVK-208ENST00000539696 608 ntTSL 5 BASIC32.66■■■□□ 2.82
PCDHA1Q9Y5I3 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
PCDHA1Q9Y5I3 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
PCDHA1Q9Y5I3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
PCDHA1Q9Y5I3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.63■■■□□ 2.81
PCDHA1Q9Y5I3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
PCDHA1Q9Y5I3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.57■■■□□ 2.8
PCDHA1Q9Y5I3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC32.57■■■□□ 2.8
PCDHA1Q9Y5I3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC32.56■■■□□ 2.8
PCDHA1Q9Y5I3 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC32.55■■■□□ 2.8
PCDHA1Q9Y5I3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC32.54■■■□□ 2.8
PCDHA1Q9Y5I3 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
PCDHA1Q9Y5I3 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
PCDHA1Q9Y5I3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC32.45■■■□□ 2.79
PCDHA1Q9Y5I3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC32.45■■■□□ 2.79
PCDHA1Q9Y5I3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.45■■■□□ 2.78
PCDHA1Q9Y5I3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC32.43■■■□□ 2.78
PCDHA1Q9Y5I3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC32.42■■■□□ 2.78
PCDHA1Q9Y5I3 RARRES2P7-201ENST00000567349 469 ntBASIC32.41■■■□□ 2.78
PCDHA1Q9Y5I3 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC32.37■■■□□ 2.77
PCDHA1Q9Y5I3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC32.36■■■□□ 2.77
PCDHA1Q9Y5I3 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
PCDHA1Q9Y5I3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
PCDHA1Q9Y5I3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
PCDHA1Q9Y5I3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
PCDHA1Q9Y5I3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
PCDHA1Q9Y5I3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.29■■■□□ 2.76
PCDHA1Q9Y5I3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC32.28■■■□□ 2.76
PCDHA1Q9Y5I3 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC32.27■■■□□ 2.76
PCDHA1Q9Y5I3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC32.27■■■□□ 2.76
PCDHA1Q9Y5I3 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.27■■■□□ 2.76
PCDHA1Q9Y5I3 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
PCDHA1Q9Y5I3 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC32.24■■■□□ 2.75
PCDHA1Q9Y5I3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
PCDHA1Q9Y5I3 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
PCDHA1Q9Y5I3 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
PCDHA1Q9Y5I3 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.2■■■□□ 2.75
PCDHA1Q9Y5I3 SETD8P1-201ENST00000623146 1180 ntBASIC32.19■■■□□ 2.74
PCDHA1Q9Y5I3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
PCDHA1Q9Y5I3 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC32.18■■■□□ 2.74
PCDHA1Q9Y5I3 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC32.18■■■□□ 2.74
PCDHA1Q9Y5I3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC32.16■■■□□ 2.74
PCDHA1Q9Y5I3 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC32.15■■■□□ 2.74
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms