Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
ZC3H4Q9UPT8 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC36.58■■■■□ 3.45
ZC3H4Q9UPT8 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC36.58■■■■□ 3.45
ZC3H4Q9UPT8 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC36.48■■■■□ 3.43
ZC3H4Q9UPT8 RARRES2P7-201ENST00000567349 469 ntBASIC36.47■■■■□ 3.43
ZC3H4Q9UPT8 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC36.47■■■■□ 3.43
ZC3H4Q9UPT8 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC36.44■■■■□ 3.42
ZC3H4Q9UPT8 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC36.4■■■■□ 3.42
ZC3H4Q9UPT8 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC36.36■■■■□ 3.41
ZC3H4Q9UPT8 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC36.26■■■■□ 3.4
ZC3H4Q9UPT8 AC097358.2-201ENST00000607541 1159 ntBASIC36.24■■■■□ 3.39
ZC3H4Q9UPT8 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC36.22■■■■□ 3.39
ZC3H4Q9UPT8 RPS2P35-201ENST00000443417 897 ntBASIC36.19■■■■□ 3.38
ZC3H4Q9UPT8 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC36.16■■■■□ 3.38
ZC3H4Q9UPT8 AC136428.2-201ENST00000563187 214 ntBASIC36.15■■■■□ 3.38
ZC3H4Q9UPT8 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC36.14■■■■□ 3.38
ZC3H4Q9UPT8 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
ZC3H4Q9UPT8 SUZ12P1-203ENST00000578195 985 ntBASIC36.11■■■■□ 3.37
ZC3H4Q9UPT8 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
ZC3H4Q9UPT8 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC36.03■■■■□ 3.36
ZC3H4Q9UPT8 SETD8P1-201ENST00000623146 1180 ntBASIC36.02■■■■□ 3.36
ZC3H4Q9UPT8 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC36■■■■□ 3.35
ZC3H4Q9UPT8 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC35.99■■■■□ 3.35
ZC3H4Q9UPT8 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC35.98■■■■□ 3.35
ZC3H4Q9UPT8 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
ZC3H4Q9UPT8 EBPL-203ENST00000378270 579 ntTSL 2 BASIC35.91■■■■□ 3.34
ZC3H4Q9UPT8 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC35.87■■■■□ 3.33
ZC3H4Q9UPT8 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
ZC3H4Q9UPT8 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC35.86■■■■□ 3.33
ZC3H4Q9UPT8 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
ZC3H4Q9UPT8 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
ZC3H4Q9UPT8 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC35.83■■■■□ 3.33
ZC3H4Q9UPT8 KLF16-203ENST00000592313 508 ntTSL 3 BASIC35.81■■■■□ 3.32
ZC3H4Q9UPT8 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC35.79■■■■□ 3.32
ZC3H4Q9UPT8 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC35.79■■■■□ 3.32
ZC3H4Q9UPT8 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
ZC3H4Q9UPT8 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC35.76■■■■□ 3.31
ZC3H4Q9UPT8 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
ZC3H4Q9UPT8 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC35.73■■■■□ 3.31
ZC3H4Q9UPT8 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC35.72■■■■□ 3.31
ZC3H4Q9UPT8 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC35.69■■■■□ 3.3
ZC3H4Q9UPT8 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC35.69■■■■□ 3.3
ZC3H4Q9UPT8 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC35.68■■■■□ 3.3
ZC3H4Q9UPT8 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC35.68■■■■□ 3.3
ZC3H4Q9UPT8 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
ZC3H4Q9UPT8 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC35.64■■■■□ 3.3
ZC3H4Q9UPT8 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC35.6■■■■□ 3.29
ZC3H4Q9UPT8 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
ZC3H4Q9UPT8 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC35.56■■■■□ 3.28
ZC3H4Q9UPT8 AL162393.1-201ENST00000437852 946 ntBASIC35.53■■■■□ 3.28
ZC3H4Q9UPT8 AP006261.1-201ENST00000584783 668 ntBASIC35.51■■■■□ 3.27
ZC3H4Q9UPT8 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
ZC3H4Q9UPT8 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC35.48■■■■□ 3.27
ZC3H4Q9UPT8 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC35.46■■■■□ 3.27
ZC3H4Q9UPT8 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC35.44■■■■□ 3.26
ZC3H4Q9UPT8 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC35.42■■■■□ 3.26
ZC3H4Q9UPT8 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC35.42■■■■□ 3.26
ZC3H4Q9UPT8 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC35.41■■■■□ 3.26
ZC3H4Q9UPT8 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
ZC3H4Q9UPT8 NRG1-221ENST00000614767 762 ntTSL 5 BASIC35.39■■■■□ 3.26
ZC3H4Q9UPT8 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
ZC3H4Q9UPT8 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
ZC3H4Q9UPT8 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC35.37■■■■□ 3.25
ZC3H4Q9UPT8 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.35■■■■□ 3.25
ZC3H4Q9UPT8 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC35.34■■■■□ 3.25
ZC3H4Q9UPT8 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.25
ZC3H4Q9UPT8 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC35.32■■■■□ 3.25
ZC3H4Q9UPT8 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
ZC3H4Q9UPT8 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC35.31■■■■□ 3.24
ZC3H4Q9UPT8 CAHM-201ENST00000604200 896 ntBASIC35.31■■■■□ 3.24
ZC3H4Q9UPT8 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC35.29■■■■□ 3.24
ZC3H4Q9UPT8 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC35.29■■■■□ 3.24
ZC3H4Q9UPT8 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC35.25■■■■□ 3.23
ZC3H4Q9UPT8 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
ZC3H4Q9UPT8 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
ZC3H4Q9UPT8 MIR7108-201ENST00000614319 87 ntBASIC35.21■■■■□ 3.23
ZC3H4Q9UPT8 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC35.21■■■■□ 3.23
ZC3H4Q9UPT8 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
ZC3H4Q9UPT8 ABHD17AP4-201ENST00000411545 909 ntBASIC35.13■■■■□ 3.21
ZC3H4Q9UPT8 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC35.13■■■■□ 3.21
ZC3H4Q9UPT8 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC35.13■■■■□ 3.21
ZC3H4Q9UPT8 AL391121.1-201ENST00000607967 1349 ntBASIC35.12■■■■□ 3.21
ZC3H4Q9UPT8 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
ZC3H4Q9UPT8 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
ZC3H4Q9UPT8 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
ZC3H4Q9UPT8 HNRNPLP2-201ENST00000568980 1570 ntBASIC35.11■■■■□ 3.21
ZC3H4Q9UPT8 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
ZC3H4Q9UPT8 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.21
ZC3H4Q9UPT8 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.06■■■■□ 3.2
ZC3H4Q9UPT8 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC35.05■■■■□ 3.2
ZC3H4Q9UPT8 MLEC-202ENST00000412616 841 ntTSL 3 BASIC35.04■■■■□ 3.2
ZC3H4Q9UPT8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
ZC3H4Q9UPT8 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC35■■■■□ 3.19
ZC3H4Q9UPT8 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC34.98■■■■□ 3.19
ZC3H4Q9UPT8 MIR3665-201ENST00000578708 105 ntBASIC34.97■■■■□ 3.19
ZC3H4Q9UPT8 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC34.96■■■■□ 3.19
ZC3H4Q9UPT8 PVT1-219ENST00000523427 938 ntTSL 3 BASIC34.93■■■■□ 3.18
ZC3H4Q9UPT8 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
ZC3H4Q9UPT8 HLA-V-202ENST00000446817 847 ntBASIC34.91■■■■□ 3.18
ZC3H4Q9UPT8 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC34.91■■■■□ 3.18
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms