Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
UPK3BQ9BT76 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC19.86■□□□□ 0.77
UPK3BQ9BT76 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
UPK3BQ9BT76 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
UPK3BQ9BT76 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UPK3BQ9BT76 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
UPK3BQ9BT76 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
UPK3BQ9BT76 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
UPK3BQ9BT76 DYNLL1-208ENST00000550178 581 ntBASIC19.84■□□□□ 0.77
UPK3BQ9BT76 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC19.83■□□□□ 0.77
UPK3BQ9BT76 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC19.83■□□□□ 0.77
UPK3BQ9BT76 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
UPK3BQ9BT76 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC19.8■□□□□ 0.76
UPK3BQ9BT76 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
UPK3BQ9BT76 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
UPK3BQ9BT76 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC19.76■□□□□ 0.75
UPK3BQ9BT76 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
UPK3BQ9BT76 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
UPK3BQ9BT76 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
UPK3BQ9BT76 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
UPK3BQ9BT76 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC19.71■□□□□ 0.75
UPK3BQ9BT76 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
UPK3BQ9BT76 AL031258.1-201ENST00000623562 325 ntBASIC19.7■□□□□ 0.74
UPK3BQ9BT76 AC145285.7-201ENST00000614819 1539 ntBASIC19.7■□□□□ 0.74
UPK3BQ9BT76 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
UPK3BQ9BT76 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
UPK3BQ9BT76 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3BQ9BT76 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
UPK3BQ9BT76 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3BQ9BT76 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3BQ9BT76 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC19.66■□□□□ 0.74
UPK3BQ9BT76 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3BQ9BT76 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
UPK3BQ9BT76 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC19.62■□□□□ 0.73
UPK3BQ9BT76 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC19.62■□□□□ 0.73
UPK3BQ9BT76 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
UPK3BQ9BT76 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
UPK3BQ9BT76 EBPL-203ENST00000378270 579 ntTSL 2 BASIC19.6■□□□□ 0.73
UPK3BQ9BT76 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC19.6■□□□□ 0.73
UPK3BQ9BT76 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
UPK3BQ9BT76 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPK3BQ9BT76 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
UPK3BQ9BT76 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
UPK3BQ9BT76 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
UPK3BQ9BT76 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.54■□□□□ 0.72
UPK3BQ9BT76 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.54■□□□□ 0.72
UPK3BQ9BT76 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
UPK3BQ9BT76 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
UPK3BQ9BT76 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
UPK3BQ9BT76 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
UPK3BQ9BT76 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC19.49■□□□□ 0.71
UPK3BQ9BT76 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC19.49■□□□□ 0.71
UPK3BQ9BT76 MVK-208ENST00000539696 608 ntTSL 5 BASIC19.45■□□□□ 0.7
UPK3BQ9BT76 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC19.45■□□□□ 0.7
UPK3BQ9BT76 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC19.43■□□□□ 0.7
UPK3BQ9BT76 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UPK3BQ9BT76 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
UPK3BQ9BT76 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
UPK3BQ9BT76 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
UPK3BQ9BT76 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
UPK3BQ9BT76 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
UPK3BQ9BT76 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC19.37■□□□□ 0.69
UPK3BQ9BT76 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC19.36■□□□□ 0.69
UPK3BQ9BT76 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3BQ9BT76 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3BQ9BT76 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
UPK3BQ9BT76 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
UPK3BQ9BT76 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
UPK3BQ9BT76 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
UPK3BQ9BT76 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
UPK3BQ9BT76 RARRES2P7-201ENST00000567349 469 ntBASIC19.31■□□□□ 0.68
UPK3BQ9BT76 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC19.3■□□□□ 0.68
UPK3BQ9BT76 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
UPK3BQ9BT76 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC19.3■□□□□ 0.68
UPK3BQ9BT76 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
UPK3BQ9BT76 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPK3BQ9BT76 KLF16-203ENST00000592313 508 ntTSL 3 BASIC19.29■□□□□ 0.68
UPK3BQ9BT76 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPK3BQ9BT76 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
UPK3BQ9BT76 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.28■□□□□ 0.68
UPK3BQ9BT76 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC19.26■□□□□ 0.67
UPK3BQ9BT76 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
UPK3BQ9BT76 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK3BQ9BT76 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
UPK3BQ9BT76 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
UPK3BQ9BT76 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
UPK3BQ9BT76 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
UPK3BQ9BT76 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
UPK3BQ9BT76 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC19.21■□□□□ 0.67
UPK3BQ9BT76 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK3BQ9BT76 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
UPK3BQ9BT76 SETD8P1-201ENST00000623146 1180 ntBASIC19.18■□□□□ 0.66
UPK3BQ9BT76 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK3BQ9BT76 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC19.17■□□□□ 0.66
UPK3BQ9BT76 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
UPK3BQ9BT76 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC19.15■□□□□ 0.66
UPK3BQ9BT76 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
UPK3BQ9BT76 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
UPK3BQ9BT76 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC19.14■□□□□ 0.65
UPK3BQ9BT76 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms