Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC29.49■■■□□ 2.31
SHROOM3Q8TF72 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC29.48■■■□□ 2.31
SHROOM3Q8TF72 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM3Q8TF72 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SHROOM3Q8TF72 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.47■■■□□ 2.31
SHROOM3Q8TF72 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC29.46■■■□□ 2.31
SHROOM3Q8TF72 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SHROOM3Q8TF72 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.41■■■□□ 2.3
SHROOM3Q8TF72 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
SHROOM3Q8TF72 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.39■■■□□ 2.29
SHROOM3Q8TF72 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC29.39■■■□□ 2.29
SHROOM3Q8TF72 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SHROOM3Q8TF72 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.38■■■□□ 2.29
SHROOM3Q8TF72 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.37■■■□□ 2.29
SHROOM3Q8TF72 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SHROOM3Q8TF72 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
SHROOM3Q8TF72 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.3■■■□□ 2.28
SHROOM3Q8TF72 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.3■■■□□ 2.28
SHROOM3Q8TF72 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC29.28■■■□□ 2.28
SHROOM3Q8TF72 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC29.26■■■□□ 2.27
SHROOM3Q8TF72 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
SHROOM3Q8TF72 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SHROOM3Q8TF72 AP002365.1-201ENST00000603448 772 ntBASIC29.25■■■□□ 2.27
SHROOM3Q8TF72 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
SHROOM3Q8TF72 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
SHROOM3Q8TF72 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.2■■■□□ 2.27
SHROOM3Q8TF72 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
SHROOM3Q8TF72 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SHROOM3Q8TF72 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM3Q8TF72 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM3Q8TF72 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM3Q8TF72 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SHROOM3Q8TF72 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC29.11■■■□□ 2.25
SHROOM3Q8TF72 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM3Q8TF72 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM3Q8TF72 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SHROOM3Q8TF72 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM3Q8TF72 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC29.09■■■□□ 2.25
SHROOM3Q8TF72 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC29.07■■■□□ 2.24
SHROOM3Q8TF72 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SHROOM3Q8TF72 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC29.04■■■□□ 2.24
SHROOM3Q8TF72 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.03■■■□□ 2.24
SHROOM3Q8TF72 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC29.02■■■□□ 2.24
SHROOM3Q8TF72 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM3Q8TF72 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SHROOM3Q8TF72 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC29.02■■■□□ 2.24
SHROOM3Q8TF72 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM3Q8TF72 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SHROOM3Q8TF72 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC28.98■■■□□ 2.23
SHROOM3Q8TF72 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SHROOM3Q8TF72 DYNLL1-208ENST00000550178 581 ntBASIC28.97■■■□□ 2.23
SHROOM3Q8TF72 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SHROOM3Q8TF72 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC28.95■■■□□ 2.22
SHROOM3Q8TF72 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM3Q8TF72 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC28.93■■■□□ 2.22
SHROOM3Q8TF72 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SHROOM3Q8TF72 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SHROOM3Q8TF72 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.9■■■□□ 2.22
SHROOM3Q8TF72 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM3Q8TF72 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SHROOM3Q8TF72 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC28.89■■■□□ 2.21
SHROOM3Q8TF72 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC28.87■■■□□ 2.21
SHROOM3Q8TF72 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC28.87■■■□□ 2.21
SHROOM3Q8TF72 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.86■■■□□ 2.21
SHROOM3Q8TF72 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
SHROOM3Q8TF72 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC28.83■■■□□ 2.21
SHROOM3Q8TF72 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.83■■■□□ 2.2
SHROOM3Q8TF72 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
SHROOM3Q8TF72 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC28.81■■■□□ 2.2
SHROOM3Q8TF72 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC28.8■■■□□ 2.2
SHROOM3Q8TF72 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC28.8■■■□□ 2.2
SHROOM3Q8TF72 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SHROOM3Q8TF72 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SHROOM3Q8TF72 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SHROOM3Q8TF72 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC28.77■■■□□ 2.2
SHROOM3Q8TF72 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC28.77■■■□□ 2.2
SHROOM3Q8TF72 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC28.77■■■□□ 2.2
SHROOM3Q8TF72 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC28.76■■■□□ 2.19
SHROOM3Q8TF72 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SHROOM3Q8TF72 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
SHROOM3Q8TF72 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC28.75■■■□□ 2.19
SHROOM3Q8TF72 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SHROOM3Q8TF72 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHROOM3Q8TF72 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
SHROOM3Q8TF72 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC28.7■■■□□ 2.19
SHROOM3Q8TF72 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.69■■■□□ 2.18
SHROOM3Q8TF72 MVK-208ENST00000539696 608 ntTSL 5 BASIC28.67■■■□□ 2.18
SHROOM3Q8TF72 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHROOM3Q8TF72 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHROOM3Q8TF72 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SHROOM3Q8TF72 AL031258.1-201ENST00000623562 325 ntBASIC28.59■■■□□ 2.17
SHROOM3Q8TF72 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SHROOM3Q8TF72 EBPL-203ENST00000378270 579 ntTSL 2 BASIC28.59■■■□□ 2.17
SHROOM3Q8TF72 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC28.56■■■□□ 2.16
SHROOM3Q8TF72 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC28.56■■■□□ 2.16
SHROOM3Q8TF72 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC28.55■■■□□ 2.16
SHROOM3Q8TF72 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC28.55■■■□□ 2.16
SHROOM3Q8TF72 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHROOM3Q8TF72 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC28.54■■■□□ 2.16
SHROOM3Q8TF72 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms