Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
SLC44A3Q8N4M1 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.51■■■□□ 2.47
SLC44A3Q8N4M1 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.48■■■□□ 2.47
SLC44A3Q8N4M1 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SLC44A3Q8N4M1 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.47■■■□□ 2.47
SLC44A3Q8N4M1 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.47■■■□□ 2.47
SLC44A3Q8N4M1 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.46■■■□□ 2.47
SLC44A3Q8N4M1 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.45■■■□□ 2.46
SLC44A3Q8N4M1 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.44■■■□□ 2.46
SLC44A3Q8N4M1 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
SLC44A3Q8N4M1 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC30.41■■■□□ 2.46
SLC44A3Q8N4M1 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.41■■■□□ 2.46
SLC44A3Q8N4M1 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.39■■■□□ 2.46
SLC44A3Q8N4M1 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SLC44A3Q8N4M1 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.36■■■□□ 2.45
SLC44A3Q8N4M1 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SLC44A3Q8N4M1 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
SLC44A3Q8N4M1 RARRES2P7-201ENST00000567349 469 ntBASIC30.33■■■□□ 2.45
SLC44A3Q8N4M1 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.29■■■□□ 2.44
SLC44A3Q8N4M1 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.24■■■□□ 2.43
SLC44A3Q8N4M1 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
SLC44A3Q8N4M1 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
SLC44A3Q8N4M1 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
SLC44A3Q8N4M1 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SLC44A3Q8N4M1 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.15■■■□□ 2.42
SLC44A3Q8N4M1 AC097358.2-201ENST00000607541 1159 ntBASIC30.14■■■□□ 2.42
SLC44A3Q8N4M1 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.08■■■□□ 2.41
SLC44A3Q8N4M1 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.08■■■□□ 2.41
SLC44A3Q8N4M1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.08■■■□□ 2.41
SLC44A3Q8N4M1 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.06■■■□□ 2.4
SLC44A3Q8N4M1 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.06■■■□□ 2.4
SLC44A3Q8N4M1 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SLC44A3Q8N4M1 AC136428.2-201ENST00000563187 214 ntBASIC30.02■■■□□ 2.4
SLC44A3Q8N4M1 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.01■■■□□ 2.4
SLC44A3Q8N4M1 SETD8P1-201ENST00000623146 1180 ntBASIC30.01■■■□□ 2.39
SLC44A3Q8N4M1 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SLC44A3Q8N4M1 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC29.95■■■□□ 2.39
SLC44A3Q8N4M1 SUZ12P1-203ENST00000578195 985 ntBASIC29.93■■■□□ 2.38
SLC44A3Q8N4M1 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SLC44A3Q8N4M1 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
SLC44A3Q8N4M1 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC29.92■■■□□ 2.38
SLC44A3Q8N4M1 KLF16-203ENST00000592313 508 ntTSL 3 BASIC29.92■■■□□ 2.38
SLC44A3Q8N4M1 RPS2P35-201ENST00000443417 897 ntBASIC29.88■■■□□ 2.37
SLC44A3Q8N4M1 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
SLC44A3Q8N4M1 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.86■■■□□ 2.37
SLC44A3Q8N4M1 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.86■■■□□ 2.37
SLC44A3Q8N4M1 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC29.86■■■□□ 2.37
SLC44A3Q8N4M1 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SLC44A3Q8N4M1 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC29.85■■■□□ 2.37
SLC44A3Q8N4M1 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
SLC44A3Q8N4M1 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
SLC44A3Q8N4M1 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
SLC44A3Q8N4M1 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.81■■■□□ 2.36
SLC44A3Q8N4M1 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
SLC44A3Q8N4M1 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.35
SLC44A3Q8N4M1 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
SLC44A3Q8N4M1 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.75■■■□□ 2.35
SLC44A3Q8N4M1 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SLC44A3Q8N4M1 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SLC44A3Q8N4M1 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.74■■■□□ 2.35
SLC44A3Q8N4M1 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.71■■■□□ 2.35
SLC44A3Q8N4M1 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.7■■■□□ 2.35
SLC44A3Q8N4M1 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.7■■■□□ 2.35
SLC44A3Q8N4M1 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.68■■■□□ 2.34
SLC44A3Q8N4M1 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SLC44A3Q8N4M1 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC29.58■■■□□ 2.33
SLC44A3Q8N4M1 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SLC44A3Q8N4M1 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC29.56■■■□□ 2.32
SLC44A3Q8N4M1 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC29.55■■■□□ 2.32
SLC44A3Q8N4M1 CAHM-201ENST00000604200 896 ntBASIC29.52■■■□□ 2.32
SLC44A3Q8N4M1 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SLC44A3Q8N4M1 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
SLC44A3Q8N4M1 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SLC44A3Q8N4M1 MVK-208ENST00000539696 608 ntTSL 5 BASIC29.47■■■□□ 2.31
SLC44A3Q8N4M1 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC29.44■■■□□ 2.3
SLC44A3Q8N4M1 AC145285.7-201ENST00000614819 1539 ntBASIC29.44■■■□□ 2.3
SLC44A3Q8N4M1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SLC44A3Q8N4M1 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC29.42■■■□□ 2.3
SLC44A3Q8N4M1 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC29.42■■■□□ 2.3
SLC44A3Q8N4M1 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
SLC44A3Q8N4M1 AL162393.1-201ENST00000437852 946 ntBASIC29.41■■■□□ 2.3
SLC44A3Q8N4M1 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC29.41■■■□□ 2.3
SLC44A3Q8N4M1 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
SLC44A3Q8N4M1 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SLC44A3Q8N4M1 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC29.37■■■□□ 2.29
SLC44A3Q8N4M1 NRG1-221ENST00000614767 762 ntTSL 5 BASIC29.37■■■□□ 2.29
SLC44A3Q8N4M1 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SLC44A3Q8N4M1 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SLC44A3Q8N4M1 AP006261.1-201ENST00000584783 668 ntBASIC29.35■■■□□ 2.29
SLC44A3Q8N4M1 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
SLC44A3Q8N4M1 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
SLC44A3Q8N4M1 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
SLC44A3Q8N4M1 AL391121.1-201ENST00000607967 1349 ntBASIC29.33■■■□□ 2.29
SLC44A3Q8N4M1 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SLC44A3Q8N4M1 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SLC44A3Q8N4M1 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SLC44A3Q8N4M1 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SLC44A3Q8N4M1 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.3■■■□□ 2.28
SLC44A3Q8N4M1 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC29.27■■■□□ 2.28
SLC44A3Q8N4M1 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC29.27■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms