Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
DEPDC4Q8N2C3 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
DEPDC4Q8N2C3 ST7-202ENST00000323984 2142 ntTSL 5 BASIC26.51■■□□□ 1.84
DEPDC4Q8N2C3 ST7-207ENST00000393449 2127 ntTSL 5 BASIC26.51■■□□□ 1.84
DEPDC4Q8N2C3 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.47■■□□□ 1.83
DEPDC4Q8N2C3 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
DEPDC4Q8N2C3 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
DEPDC4Q8N2C3 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC26.45■■□□□ 1.83
DEPDC4Q8N2C3 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
DEPDC4Q8N2C3 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
DEPDC4Q8N2C3 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
DEPDC4Q8N2C3 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
DEPDC4Q8N2C3 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
DEPDC4Q8N2C3 AC145285.7-201ENST00000614819 1539 ntBASIC26.39■■□□□ 1.82
DEPDC4Q8N2C3 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
DEPDC4Q8N2C3 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
DEPDC4Q8N2C3 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
DEPDC4Q8N2C3 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
DEPDC4Q8N2C3 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
DEPDC4Q8N2C3 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.29■■□□□ 1.8
DEPDC4Q8N2C3 AC015813.7-201ENST00000623294 581 ntBASIC26.29■■□□□ 1.8
DEPDC4Q8N2C3 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC26.28■■□□□ 1.8
DEPDC4Q8N2C3 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
DEPDC4Q8N2C3 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
DEPDC4Q8N2C3 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.25■■□□□ 1.79
DEPDC4Q8N2C3 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
DEPDC4Q8N2C3 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
DEPDC4Q8N2C3 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
DEPDC4Q8N2C3 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC26.19■■□□□ 1.78
DEPDC4Q8N2C3 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
DEPDC4Q8N2C3 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
DEPDC4Q8N2C3 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
DEPDC4Q8N2C3 AC006077.2-201ENST00000623591 457 ntBASIC26.17■■□□□ 1.78
DEPDC4Q8N2C3 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
DEPDC4Q8N2C3 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
DEPDC4Q8N2C3 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
DEPDC4Q8N2C3 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC26.11■■□□□ 1.77
DEPDC4Q8N2C3 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
DEPDC4Q8N2C3 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
DEPDC4Q8N2C3 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
DEPDC4Q8N2C3 ZNRF2P1-201ENST00000441407 443 ntBASIC26.07■■□□□ 1.76
DEPDC4Q8N2C3 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
DEPDC4Q8N2C3 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
DEPDC4Q8N2C3 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
DEPDC4Q8N2C3 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
DEPDC4Q8N2C3 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.06■■□□□ 1.76
DEPDC4Q8N2C3 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC26.05■■□□□ 1.76
DEPDC4Q8N2C3 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
DEPDC4Q8N2C3 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
DEPDC4Q8N2C3 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
DEPDC4Q8N2C3 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
DEPDC4Q8N2C3 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26■■□□□ 1.75
DEPDC4Q8N2C3 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
DEPDC4Q8N2C3 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
DEPDC4Q8N2C3 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
DEPDC4Q8N2C3 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
DEPDC4Q8N2C3 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC25.97■■□□□ 1.75
DEPDC4Q8N2C3 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
DEPDC4Q8N2C3 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
DEPDC4Q8N2C3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
DEPDC4Q8N2C3 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
DEPDC4Q8N2C3 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
DEPDC4Q8N2C3 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
DEPDC4Q8N2C3 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
DEPDC4Q8N2C3 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
DEPDC4Q8N2C3 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
DEPDC4Q8N2C3 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC25.89■■□□□ 1.74
DEPDC4Q8N2C3 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
DEPDC4Q8N2C3 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
DEPDC4Q8N2C3 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
DEPDC4Q8N2C3 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
DEPDC4Q8N2C3 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
DEPDC4Q8N2C3 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
DEPDC4Q8N2C3 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
DEPDC4Q8N2C3 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC25.84■■□□□ 1.73
DEPDC4Q8N2C3 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
DEPDC4Q8N2C3 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
DEPDC4Q8N2C3 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
DEPDC4Q8N2C3 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
DEPDC4Q8N2C3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC25.8■■□□□ 1.72
DEPDC4Q8N2C3 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
DEPDC4Q8N2C3 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
DEPDC4Q8N2C3 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
DEPDC4Q8N2C3 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
DEPDC4Q8N2C3 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
DEPDC4Q8N2C3 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
DEPDC4Q8N2C3 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
DEPDC4Q8N2C3 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
DEPDC4Q8N2C3 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
DEPDC4Q8N2C3 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
DEPDC4Q8N2C3 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
DEPDC4Q8N2C3 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
DEPDC4Q8N2C3 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
DEPDC4Q8N2C3 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
DEPDC4Q8N2C3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
DEPDC4Q8N2C3 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
DEPDC4Q8N2C3 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
DEPDC4Q8N2C3 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
DEPDC4Q8N2C3 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.64■■□□□ 1.69
DEPDC4Q8N2C3 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms