Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC35.69■■■■□ 3.3
USP48Q86UV5 AL031258.1-201ENST00000623562 325 ntBASIC35.69■■■■□ 3.3
USP48Q86UV5 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
USP48Q86UV5 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC35.59■■■■□ 3.29
USP48Q86UV5 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC35.58■■■■□ 3.29
USP48Q86UV5 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC35.57■■■■□ 3.28
USP48Q86UV5 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC35.56■■■■□ 3.28
USP48Q86UV5 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC35.56■■■■□ 3.28
USP48Q86UV5 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC35.55■■■■□ 3.28
USP48Q86UV5 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC35.55■■■■□ 3.28
USP48Q86UV5 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC35.54■■■■□ 3.28
USP48Q86UV5 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC35.53■■■■□ 3.28
USP48Q86UV5 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC35.53■■■■□ 3.28
USP48Q86UV5 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
USP48Q86UV5 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
USP48Q86UV5 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC35.48■■■■□ 3.27
USP48Q86UV5 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
USP48Q86UV5 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC35.44■■■■□ 3.26
USP48Q86UV5 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC35.42■■■■□ 3.26
USP48Q86UV5 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC35.41■■■■□ 3.26
USP48Q86UV5 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC35.37■■■■□ 3.25
USP48Q86UV5 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC35.36■■■■□ 3.25
USP48Q86UV5 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
USP48Q86UV5 RARRES2P7-201ENST00000567349 469 ntBASIC35.34■■■■□ 3.25
USP48Q86UV5 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC35.33■■■■□ 3.25
USP48Q86UV5 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC35.32■■■■□ 3.24
USP48Q86UV5 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC35.31■■■■□ 3.24
USP48Q86UV5 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC35.29■■■■□ 3.24
USP48Q86UV5 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC35.28■■■■□ 3.24
USP48Q86UV5 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
USP48Q86UV5 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC35.21■■■■□ 3.23
USP48Q86UV5 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC35.19■■■■□ 3.22
USP48Q86UV5 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC35.15■■■■□ 3.22
USP48Q86UV5 AC097358.2-201ENST00000607541 1159 ntBASIC35.13■■■■□ 3.21
USP48Q86UV5 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC35.12■■■■□ 3.21
USP48Q86UV5 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC35.11■■■■□ 3.21
USP48Q86UV5 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC35.1■■■■□ 3.21
USP48Q86UV5 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC35.09■■■■□ 3.21
USP48Q86UV5 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
USP48Q86UV5 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC35.06■■■■□ 3.2
USP48Q86UV5 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC34.99■■■■□ 3.19
USP48Q86UV5 RPS2P35-201ENST00000443417 897 ntBASIC34.98■■■■□ 3.19
USP48Q86UV5 AC136428.2-201ENST00000563187 214 ntBASIC34.98■■■■□ 3.19
USP48Q86UV5 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
USP48Q86UV5 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC34.93■■■■□ 3.18
USP48Q86UV5 SETD8P1-201ENST00000623146 1180 ntBASIC34.93■■■■□ 3.18
USP48Q86UV5 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
USP48Q86UV5 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
USP48Q86UV5 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC34.92■■■■□ 3.18
USP48Q86UV5 SUZ12P1-203ENST00000578195 985 ntBASIC34.9■■■■□ 3.18
USP48Q86UV5 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC34.9■■■■□ 3.18
USP48Q86UV5 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
USP48Q86UV5 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
USP48Q86UV5 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC34.8■■■■□ 3.16
USP48Q86UV5 EBPL-203ENST00000378270 579 ntTSL 2 BASIC34.79■■■■□ 3.16
USP48Q86UV5 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC34.78■■■■□ 3.16
USP48Q86UV5 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.16
USP48Q86UV5 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.16
USP48Q86UV5 KLF16-203ENST00000592313 508 ntTSL 3 BASIC34.76■■■■□ 3.16
USP48Q86UV5 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC34.74■■■■□ 3.15
USP48Q86UV5 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC34.74■■■■□ 3.15
USP48Q86UV5 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC34.73■■■■□ 3.15
USP48Q86UV5 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC34.73■■■■□ 3.15
USP48Q86UV5 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
USP48Q86UV5 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC34.72■■■■□ 3.15
USP48Q86UV5 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
USP48Q86UV5 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
USP48Q86UV5 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC34.66■■■■□ 3.14
USP48Q86UV5 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC34.65■■■■□ 3.14
USP48Q86UV5 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
USP48Q86UV5 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
USP48Q86UV5 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC34.62■■■■□ 3.13
USP48Q86UV5 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
USP48Q86UV5 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC34.62■■■■□ 3.13
USP48Q86UV5 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC34.58■■■■□ 3.13
USP48Q86UV5 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC34.58■■■■□ 3.13
USP48Q86UV5 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
USP48Q86UV5 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC34.55■■■■□ 3.12
USP48Q86UV5 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
USP48Q86UV5 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC34.5■■■■□ 3.11
USP48Q86UV5 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC34.49■■■■□ 3.11
USP48Q86UV5 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC34.46■■■■□ 3.11
USP48Q86UV5 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
USP48Q86UV5 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC34.44■■■■□ 3.1
USP48Q86UV5 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC34.4■■■■□ 3.1
USP48Q86UV5 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
USP48Q86UV5 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC34.38■■■■□ 3.09
USP48Q86UV5 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
USP48Q86UV5 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC34.36■■■■□ 3.09
USP48Q86UV5 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
USP48Q86UV5 ILK-212ENST00000532063 1617 ntTSL 2 BASIC34.35■■■■□ 3.09
USP48Q86UV5 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC34.34■■■■□ 3.09
USP48Q86UV5 CAHM-201ENST00000604200 896 ntBASIC34.34■■■■□ 3.09
USP48Q86UV5 AL162393.1-201ENST00000437852 946 ntBASIC34.31■■■■□ 3.08
USP48Q86UV5 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
USP48Q86UV5 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.08
USP48Q86UV5 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
USP48Q86UV5 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
USP48Q86UV5 NRG1-221ENST00000614767 762 ntTSL 5 BASIC34.25■■■■□ 3.07
USP48Q86UV5 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms