Protein–RNA interactions for Protein: Q7Z4I7

LIMS2, LIM and senescent cell antigen-like-containing domain protein 2, humanhuman

Predictions only

Length 341 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2Q7Z4I7 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.94■■■□□ 2.54
LIMS2Q7Z4I7 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.92■■■□□ 2.54
LIMS2Q7Z4I7 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
LIMS2Q7Z4I7 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
LIMS2Q7Z4I7 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
LIMS2Q7Z4I7 DYNLL1-208ENST00000550178 581 ntBASIC30.89■■■□□ 2.54
LIMS2Q7Z4I7 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.89■■■□□ 2.53
LIMS2Q7Z4I7 AC145285.7-201ENST00000614819 1539 ntBASIC30.88■■■□□ 2.53
LIMS2Q7Z4I7 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.86■■■□□ 2.53
LIMS2Q7Z4I7 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
LIMS2Q7Z4I7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.84■■■□□ 2.53
LIMS2Q7Z4I7 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
LIMS2Q7Z4I7 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
LIMS2Q7Z4I7 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
LIMS2Q7Z4I7 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
LIMS2Q7Z4I7 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
LIMS2Q7Z4I7 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
LIMS2Q7Z4I7 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.75■■■□□ 2.51
LIMS2Q7Z4I7 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.75■■■□□ 2.51
LIMS2Q7Z4I7 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.73■■■□□ 2.51
LIMS2Q7Z4I7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.72■■■□□ 2.51
LIMS2Q7Z4I7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
LIMS2Q7Z4I7 AL031258.1-201ENST00000623562 325 ntBASIC30.72■■■□□ 2.51
LIMS2Q7Z4I7 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.72■■■□□ 2.51
LIMS2Q7Z4I7 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
LIMS2Q7Z4I7 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
LIMS2Q7Z4I7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.68■■■□□ 2.5
LIMS2Q7Z4I7 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
LIMS2Q7Z4I7 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.66■■■□□ 2.5
LIMS2Q7Z4I7 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.64■■■□□ 2.5
LIMS2Q7Z4I7 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
LIMS2Q7Z4I7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.63■■■□□ 2.49
LIMS2Q7Z4I7 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
LIMS2Q7Z4I7 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.63■■■□□ 2.49
LIMS2Q7Z4I7 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
LIMS2Q7Z4I7 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
LIMS2Q7Z4I7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
LIMS2Q7Z4I7 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
LIMS2Q7Z4I7 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.48■■■□□ 2.47
LIMS2Q7Z4I7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
LIMS2Q7Z4I7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
LIMS2Q7Z4I7 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.48■■■□□ 2.47
LIMS2Q7Z4I7 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.48■■■□□ 2.47
LIMS2Q7Z4I7 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
LIMS2Q7Z4I7 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
LIMS2Q7Z4I7 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
LIMS2Q7Z4I7 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
LIMS2Q7Z4I7 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.43■■■□□ 2.46
LIMS2Q7Z4I7 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
LIMS2Q7Z4I7 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
LIMS2Q7Z4I7 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.32■■■□□ 2.44
LIMS2Q7Z4I7 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.32■■■□□ 2.44
LIMS2Q7Z4I7 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.32■■■□□ 2.44
LIMS2Q7Z4I7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.29■■■□□ 2.44
LIMS2Q7Z4I7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
LIMS2Q7Z4I7 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.25■■■□□ 2.43
LIMS2Q7Z4I7 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
LIMS2Q7Z4I7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.23■■■□□ 2.43
LIMS2Q7Z4I7 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
LIMS2Q7Z4I7 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
LIMS2Q7Z4I7 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.2■■■□□ 2.43
LIMS2Q7Z4I7 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.19■■■□□ 2.42
LIMS2Q7Z4I7 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.19■■■□□ 2.42
LIMS2Q7Z4I7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
LIMS2Q7Z4I7 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
LIMS2Q7Z4I7 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.17■■■□□ 2.42
LIMS2Q7Z4I7 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.13■■■□□ 2.41
LIMS2Q7Z4I7 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
LIMS2Q7Z4I7 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
LIMS2Q7Z4I7 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
LIMS2Q7Z4I7 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.07■■■□□ 2.4
LIMS2Q7Z4I7 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
LIMS2Q7Z4I7 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.03■■■□□ 2.4
LIMS2Q7Z4I7 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
LIMS2Q7Z4I7 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.01■■■□□ 2.39
LIMS2Q7Z4I7 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30■■■□□ 2.39
LIMS2Q7Z4I7 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30■■■□□ 2.39
LIMS2Q7Z4I7 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
LIMS2Q7Z4I7 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC29.97■■■□□ 2.39
LIMS2Q7Z4I7 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
LIMS2Q7Z4I7 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
LIMS2Q7Z4I7 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC29.93■■■□□ 2.38
LIMS2Q7Z4I7 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.93■■■□□ 2.38
LIMS2Q7Z4I7 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
LIMS2Q7Z4I7 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
LIMS2Q7Z4I7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
LIMS2Q7Z4I7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
LIMS2Q7Z4I7 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC29.9■■■□□ 2.38
LIMS2Q7Z4I7 KLF16-203ENST00000592313 508 ntTSL 3 BASIC29.9■■■□□ 2.38
LIMS2Q7Z4I7 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC29.89■■■□□ 2.38
LIMS2Q7Z4I7 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.87■■■□□ 2.37
LIMS2Q7Z4I7 RARRES2P7-201ENST00000567349 469 ntBASIC29.85■■■□□ 2.37
LIMS2Q7Z4I7 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.84■■■□□ 2.37
LIMS2Q7Z4I7 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.84■■■□□ 2.37
LIMS2Q7Z4I7 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
LIMS2Q7Z4I7 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
LIMS2Q7Z4I7 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
LIMS2Q7Z4I7 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.8■■■□□ 2.36
LIMS2Q7Z4I7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.76■■■□□ 2.35
LIMS2Q7Z4I7 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms