Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC28.94■■■□□ 2.22
LRRK1Q38SD2 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
LRRK1Q38SD2 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
LRRK1Q38SD2 DYNLL1-208ENST00000550178 581 ntBASIC28.91■■■□□ 2.22
LRRK1Q38SD2 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
LRRK1Q38SD2 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
LRRK1Q38SD2 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28.84■■■□□ 2.21
LRRK1Q38SD2 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC28.84■■■□□ 2.21
LRRK1Q38SD2 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC28.82■■■□□ 2.2
LRRK1Q38SD2 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
LRRK1Q38SD2 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
LRRK1Q38SD2 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC28.81■■■□□ 2.2
LRRK1Q38SD2 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
LRRK1Q38SD2 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
LRRK1Q38SD2 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC28.79■■■□□ 2.2
LRRK1Q38SD2 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC28.79■■■□□ 2.2
LRRK1Q38SD2 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
LRRK1Q38SD2 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC28.78■■■□□ 2.2
LRRK1Q38SD2 AC145285.7-201ENST00000614819 1539 ntBASIC28.78■■■□□ 2.2
LRRK1Q38SD2 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.77■■■□□ 2.2
LRRK1Q38SD2 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC28.76■■■□□ 2.19
LRRK1Q38SD2 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
LRRK1Q38SD2 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
LRRK1Q38SD2 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC28.74■■■□□ 2.19
LRRK1Q38SD2 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
LRRK1Q38SD2 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
LRRK1Q38SD2 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC28.69■■■□□ 2.18
LRRK1Q38SD2 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
LRRK1Q38SD2 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
LRRK1Q38SD2 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.18
LRRK1Q38SD2 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
LRRK1Q38SD2 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC28.6■■■□□ 2.17
LRRK1Q38SD2 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC28.59■■■□□ 2.17
LRRK1Q38SD2 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC28.58■■■□□ 2.17
LRRK1Q38SD2 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
LRRK1Q38SD2 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC28.58■■■□□ 2.17
LRRK1Q38SD2 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC28.58■■■□□ 2.17
LRRK1Q38SD2 AL031258.1-201ENST00000623562 325 ntBASIC28.58■■■□□ 2.17
LRRK1Q38SD2 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
LRRK1Q38SD2 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC28.56■■■□□ 2.16
LRRK1Q38SD2 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
LRRK1Q38SD2 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
LRRK1Q38SD2 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
LRRK1Q38SD2 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
LRRK1Q38SD2 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC28.5■■■□□ 2.15
LRRK1Q38SD2 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
LRRK1Q38SD2 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC28.42■■■□□ 2.14
LRRK1Q38SD2 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC28.4■■■□□ 2.14
LRRK1Q38SD2 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC28.4■■■□□ 2.14
LRRK1Q38SD2 EBPL-203ENST00000378270 579 ntTSL 2 BASIC28.39■■■□□ 2.14
LRRK1Q38SD2 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
LRRK1Q38SD2 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
LRRK1Q38SD2 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC28.32■■■□□ 2.12
LRRK1Q38SD2 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
LRRK1Q38SD2 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
LRRK1Q38SD2 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC28.3■■■□□ 2.12
LRRK1Q38SD2 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.3■■■□□ 2.12
LRRK1Q38SD2 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
LRRK1Q38SD2 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
LRRK1Q38SD2 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC28.28■■■□□ 2.12
LRRK1Q38SD2 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC28.28■■■□□ 2.12
LRRK1Q38SD2 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC28.26■■■□□ 2.11
LRRK1Q38SD2 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
LRRK1Q38SD2 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
LRRK1Q38SD2 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
LRRK1Q38SD2 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
LRRK1Q38SD2 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
LRRK1Q38SD2 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
LRRK1Q38SD2 MVK-208ENST00000539696 608 ntTSL 5 BASIC28.2■■■□□ 2.11
LRRK1Q38SD2 RARRES2P7-201ENST00000567349 469 ntBASIC28.2■■■□□ 2.11
LRRK1Q38SD2 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC28.2■■■□□ 2.11
LRRK1Q38SD2 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC28.16■■■□□ 2.1
LRRK1Q38SD2 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.15■■■□□ 2.1
LRRK1Q38SD2 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
LRRK1Q38SD2 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
LRRK1Q38SD2 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.08■■■□□ 2.09
LRRK1Q38SD2 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
LRRK1Q38SD2 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.04■■■□□ 2.08
LRRK1Q38SD2 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC28.03■■■□□ 2.08
LRRK1Q38SD2 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC28.03■■■□□ 2.08
LRRK1Q38SD2 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC28.01■■■□□ 2.07
LRRK1Q38SD2 AC136428.2-201ENST00000563187 214 ntBASIC27.99■■■□□ 2.07
LRRK1Q38SD2 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC27.99■■■□□ 2.07
LRRK1Q38SD2 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC27.99■■■□□ 2.07
LRRK1Q38SD2 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC27.98■■■□□ 2.07
LRRK1Q38SD2 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
LRRK1Q38SD2 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
LRRK1Q38SD2 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC27.97■■■□□ 2.07
LRRK1Q38SD2 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC27.95■■■□□ 2.07
LRRK1Q38SD2 SETD8P1-201ENST00000623146 1180 ntBASIC27.94■■■□□ 2.06
LRRK1Q38SD2 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC27.94■■■□□ 2.06
LRRK1Q38SD2 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
LRRK1Q38SD2 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC27.92■■■□□ 2.06
LRRK1Q38SD2 KLF16-203ENST00000592313 508 ntTSL 3 BASIC27.92■■■□□ 2.06
LRRK1Q38SD2 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.92■■■□□ 2.06
LRRK1Q38SD2 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC27.91■■■□□ 2.06
LRRK1Q38SD2 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.06
LRRK1Q38SD2 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC27.9■■■□□ 2.06
LRRK1Q38SD2 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
LRRK1Q38SD2 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms