Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 HES6-203ENST00000409160 1600 ntTSL 2 BASIC31.58■■■□□ 2.65
VCANP13611 AL031258.1-201ENST00000623562 325 ntBASIC31.5■■■□□ 2.63
VCANP13611 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
VCANP13611 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
VCANP13611 AC097358.2-201ENST00000607541 1159 ntBASIC31.48■■■□□ 2.63
VCANP13611 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
VCANP13611 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.42■■■□□ 2.62
VCANP13611 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
VCANP13611 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.37■■■□□ 2.61
VCANP13611 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
VCANP13611 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.34■■■□□ 2.61
VCANP13611 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.29■■■□□ 2.6
VCANP13611 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
VCANP13611 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.27■■■□□ 2.6
VCANP13611 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
VCANP13611 AL162393.1-201ENST00000437852 946 ntBASIC31.24■■■□□ 2.59
VCANP13611 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.22■■■□□ 2.59
VCANP13611 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.22■■■□□ 2.59
VCANP13611 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
VCANP13611 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.21■■■□□ 2.59
VCANP13611 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.2■■■□□ 2.58
VCANP13611 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
VCANP13611 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VCANP13611 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
VCANP13611 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.16■■■□□ 2.58
VCANP13611 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.13■■■□□ 2.57
VCANP13611 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.13■■■□□ 2.57
VCANP13611 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.11■■■□□ 2.57
VCANP13611 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
VCANP13611 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
VCANP13611 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.07■■■□□ 2.56
VCANP13611 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
VCANP13611 SETD8P1-201ENST00000623146 1180 ntBASIC31.05■■■□□ 2.56
VCANP13611 MIR7108-201ENST00000614319 87 ntBASIC31.04■■■□□ 2.56
VCANP13611 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
VCANP13611 HLA-V-202ENST00000446817 847 ntBASIC31■■■□□ 2.55
VCANP13611 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.95■■■□□ 2.54
VCANP13611 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
VCANP13611 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC30.94■■■□□ 2.54
VCANP13611 ABHD17AP4-201ENST00000411545 909 ntBASIC30.94■■■□□ 2.54
VCANP13611 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.93■■■□□ 2.54
VCANP13611 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
VCANP13611 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
VCANP13611 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.9■■■□□ 2.54
VCANP13611 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.85■■■□□ 2.53
VCANP13611 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
VCANP13611 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
VCANP13611 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
VCANP13611 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
VCANP13611 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.77■■■□□ 2.52
VCANP13611 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
VCANP13611 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.75■■■□□ 2.51
VCANP13611 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.71■■■□□ 2.51
VCANP13611 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
VCANP13611 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
VCANP13611 AP006261.1-201ENST00000584783 668 ntBASIC30.68■■■□□ 2.5
VCANP13611 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
VCANP13611 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.66■■■□□ 2.5
VCANP13611 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.64■■■□□ 2.5
VCANP13611 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
VCANP13611 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.61■■■□□ 2.49
VCANP13611 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.6■■■□□ 2.49
VCANP13611 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.59■■■□□ 2.49
VCANP13611 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC30.58■■■□□ 2.49
VCANP13611 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
VCANP13611 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
VCANP13611 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.54■■■□□ 2.48
VCANP13611 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.53■■■□□ 2.48
VCANP13611 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.52■■■□□ 2.48
VCANP13611 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
VCANP13611 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.5■■■□□ 2.47
VCANP13611 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
VCANP13611 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.48■■■□□ 2.47
VCANP13611 CAHM-201ENST00000604200 896 ntBASIC30.48■■■□□ 2.47
VCANP13611 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.47■■■□□ 2.47
VCANP13611 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
VCANP13611 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.46
VCANP13611 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.45■■■□□ 2.46
VCANP13611 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.44■■■□□ 2.46
VCANP13611 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.41■■■□□ 2.46
VCANP13611 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.41■■■□□ 2.46
VCANP13611 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
VCANP13611 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
VCANP13611 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.4■■■□□ 2.46
VCANP13611 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
VCANP13611 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.37■■■□□ 2.45
VCANP13611 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
VCANP13611 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.36■■■□□ 2.45
VCANP13611 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
VCANP13611 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.34■■■□□ 2.45
VCANP13611 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.34■■■□□ 2.45
VCANP13611 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.32■■■□□ 2.44
VCANP13611 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
VCANP13611 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
VCANP13611 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.32■■■□□ 2.44
VCANP13611 MIR4449-201ENST00000578365 66 ntBASIC30.31■■■□□ 2.44
VCANP13611 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
VCANP13611 AL391121.1-201ENST00000607967 1349 ntBASIC30.29■■■□□ 2.44
VCANP13611 AC087741.3-201ENST00000624270 1347 ntBASIC30.28■■■□□ 2.44
VCANP13611 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.24■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms