Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
APOBP04114 AC136428.2-201ENST00000563187 214 ntBASIC18.96■□□□□ 0.63
APOBP04114 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
APOBP04114 RARRES2P7-201ENST00000567349 469 ntBASIC18.95■□□□□ 0.62
APOBP04114 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC18.95■□□□□ 0.62
APOBP04114 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC18.94■□□□□ 0.62
APOBP04114 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
APOBP04114 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
APOBP04114 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
APOBP04114 RPS2P35-201ENST00000443417 897 ntBASIC18.87■□□□□ 0.61
APOBP04114 SUZ12P1-203ENST00000578195 985 ntBASIC18.87■□□□□ 0.61
APOBP04114 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
APOBP04114 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
APOBP04114 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
APOBP04114 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
APOBP04114 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
APOBP04114 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOBP04114 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
APOBP04114 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
APOBP04114 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC18.76■□□□□ 0.59
APOBP04114 AC097358.2-201ENST00000607541 1159 ntBASIC18.72■□□□□ 0.59
APOBP04114 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
APOBP04114 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC18.7■□□□□ 0.58
APOBP04114 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
APOBP04114 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
APOBP04114 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
APOBP04114 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
APOBP04114 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC18.65■□□□□ 0.58
APOBP04114 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
APOBP04114 SETD8P1-201ENST00000623146 1180 ntBASIC18.64■□□□□ 0.57
APOBP04114 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
APOBP04114 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC18.62■□□□□ 0.57
APOBP04114 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC18.62■□□□□ 0.57
APOBP04114 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
APOBP04114 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
APOBP04114 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC18.59■□□□□ 0.57
APOBP04114 NRG1-221ENST00000614767 762 ntTSL 5 BASIC18.58■□□□□ 0.56
APOBP04114 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC18.57■□□□□ 0.56
APOBP04114 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC18.57■□□□□ 0.56
APOBP04114 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
APOBP04114 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC18.54■□□□□ 0.56
APOBP04114 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
APOBP04114 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC18.54■□□□□ 0.56
APOBP04114 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC18.53■□□□□ 0.56
APOBP04114 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
APOBP04114 EBPL-203ENST00000378270 579 ntTSL 2 BASIC18.52■□□□□ 0.56
APOBP04114 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC18.52■□□□□ 0.56
APOBP04114 AL162393.1-201ENST00000437852 946 ntBASIC18.51■□□□□ 0.55
APOBP04114 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC18.5■□□□□ 0.55
APOBP04114 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOBP04114 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
APOBP04114 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
APOBP04114 KLF16-203ENST00000592313 508 ntTSL 3 BASIC18.47■□□□□ 0.55
APOBP04114 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
APOBP04114 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC18.44■□□□□ 0.54
APOBP04114 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC18.41■□□□□ 0.54
APOBP04114 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC18.41■□□□□ 0.54
APOBP04114 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
APOBP04114 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
APOBP04114 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
APOBP04114 CAHM-201ENST00000604200 896 ntBASIC18.35■□□□□ 0.53
APOBP04114 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
APOBP04114 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
APOBP04114 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
APOBP04114 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
APOBP04114 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
APOBP04114 AL391121.1-201ENST00000607967 1349 ntBASIC18.33■□□□□ 0.52
APOBP04114 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
APOBP04114 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
APOBP04114 AC145285.7-201ENST00000614819 1539 ntBASIC18.3■□□□□ 0.52
APOBP04114 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC18.29■□□□□ 0.52
APOBP04114 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
APOBP04114 AP006261.1-201ENST00000584783 668 ntBASIC18.27■□□□□ 0.51
APOBP04114 HNRNPLP2-201ENST00000568980 1570 ntBASIC18.27■□□□□ 0.51
APOBP04114 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
APOBP04114 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC18.26■□□□□ 0.51
APOBP04114 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOBP04114 ABHD17AP4-201ENST00000411545 909 ntBASIC18.21■□□□□ 0.51
APOBP04114 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOBP04114 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
APOBP04114 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
APOBP04114 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
APOBP04114 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
APOBP04114 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
APOBP04114 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
APOBP04114 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
APOBP04114 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
APOBP04114 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
APOBP04114 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC18.16■□□□□ 0.5
APOBP04114 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
APOBP04114 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
APOBP04114 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC18.15■□□□□ 0.5
APOBP04114 HLA-V-202ENST00000446817 847 ntBASIC18.13■□□□□ 0.49
APOBP04114 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
APOBP04114 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
APOBP04114 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
APOBP04114 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
APOBP04114 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
APOBP04114 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC18.07■□□□□ 0.48
APOBP04114 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms