Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CLDN3O15551 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.61■■■□□ 2.65
CLDN3O15551 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CLDN3O15551 AC145285.7-201ENST00000614819 1539 ntBASIC31.59■■■□□ 2.65
CLDN3O15551 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CLDN3O15551 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
CLDN3O15551 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.54■■■□□ 2.64
CLDN3O15551 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.64
CLDN3O15551 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.53■■■□□ 2.64
CLDN3O15551 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
CLDN3O15551 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC31.51■■■□□ 2.63
CLDN3O15551 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC31.5■■■□□ 2.63
CLDN3O15551 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CLDN3O15551 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CLDN3O15551 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CLDN3O15551 DYNLL1-208ENST00000550178 581 ntBASIC31.46■■■□□ 2.63
CLDN3O15551 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CLDN3O15551 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.42■■■□□ 2.62
CLDN3O15551 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
CLDN3O15551 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
CLDN3O15551 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC31.4■■■□□ 2.62
CLDN3O15551 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.38■■■□□ 2.61
CLDN3O15551 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
CLDN3O15551 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.36■■■□□ 2.61
CLDN3O15551 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CLDN3O15551 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.36■■■□□ 2.61
CLDN3O15551 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CLDN3O15551 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CLDN3O15551 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
CLDN3O15551 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CLDN3O15551 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.32■■■□□ 2.6
CLDN3O15551 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.3■■■□□ 2.6
CLDN3O15551 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.29■■■□□ 2.6
CLDN3O15551 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CLDN3O15551 AL031258.1-201ENST00000623562 325 ntBASIC31.24■■■□□ 2.59
CLDN3O15551 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC31.22■■■□□ 2.59
CLDN3O15551 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC31.21■■■□□ 2.59
CLDN3O15551 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.19■■■□□ 2.58
CLDN3O15551 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CLDN3O15551 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
CLDN3O15551 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
CLDN3O15551 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CLDN3O15551 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CLDN3O15551 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
CLDN3O15551 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CLDN3O15551 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.09■■■□□ 2.57
CLDN3O15551 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CLDN3O15551 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CLDN3O15551 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
CLDN3O15551 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CLDN3O15551 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.98■■■□□ 2.55
CLDN3O15551 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
CLDN3O15551 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.92■■■□□ 2.54
CLDN3O15551 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC30.91■■■□□ 2.54
CLDN3O15551 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC30.91■■■□□ 2.54
CLDN3O15551 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CLDN3O15551 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
CLDN3O15551 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CLDN3O15551 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.88■■■□□ 2.53
CLDN3O15551 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CLDN3O15551 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.87■■■□□ 2.53
CLDN3O15551 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CLDN3O15551 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.86■■■□□ 2.53
CLDN3O15551 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CLDN3O15551 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.84■■■□□ 2.53
CLDN3O15551 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
CLDN3O15551 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.82■■■□□ 2.53
CLDN3O15551 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CLDN3O15551 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CLDN3O15551 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.51
CLDN3O15551 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CLDN3O15551 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.74■■■□□ 2.51
CLDN3O15551 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CLDN3O15551 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.73■■■□□ 2.51
CLDN3O15551 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
CLDN3O15551 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.71■■■□□ 2.51
CLDN3O15551 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CLDN3O15551 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.7■■■□□ 2.51
CLDN3O15551 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CLDN3O15551 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.65■■■□□ 2.5
CLDN3O15551 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CLDN3O15551 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CLDN3O15551 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CLDN3O15551 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.61■■■□□ 2.49
CLDN3O15551 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.61■■■□□ 2.49
CLDN3O15551 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC30.61■■■□□ 2.49
CLDN3O15551 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.6■■■□□ 2.49
CLDN3O15551 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.6■■■□□ 2.49
CLDN3O15551 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.6■■■□□ 2.49
CLDN3O15551 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CLDN3O15551 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CLDN3O15551 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CLDN3O15551 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
CLDN3O15551 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
CLDN3O15551 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CLDN3O15551 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.52■■■□□ 2.48
CLDN3O15551 RARRES2P7-201ENST00000567349 469 ntBASIC30.5■■■□□ 2.47
CLDN3O15551 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.49■■■□□ 2.47
CLDN3O15551 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC30.48■■■□□ 2.47
CLDN3O15551 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 8.5 ms