Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC38.64■■■■□ 3.78
SENP3-EIF4A1A0A087X0R7 AP002365.1-201ENST00000603448 772 ntBASIC38.64■■■■□ 3.78
SENP3-EIF4A1A0A087X0R7 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
SENP3-EIF4A1A0A087X0R7 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC38.55■■■■□ 3.76
SENP3-EIF4A1A0A087X0R7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC38.52■■■■□ 3.76
SENP3-EIF4A1A0A087X0R7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC38.52■■■■□ 3.76
SENP3-EIF4A1A0A087X0R7 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC38.5■■■■□ 3.75
SENP3-EIF4A1A0A087X0R7 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC38.47■■■■□ 3.75
SENP3-EIF4A1A0A087X0R7 AC145285.7-201ENST00000614819 1539 ntBASIC38.44■■■■□ 3.74
SENP3-EIF4A1A0A087X0R7 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC38.38■■■■□ 3.73
SENP3-EIF4A1A0A087X0R7 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC38.37■■■■□ 3.73
SENP3-EIF4A1A0A087X0R7 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC38.36■■■■□ 3.73
SENP3-EIF4A1A0A087X0R7 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC38.31■■■■□ 3.72
SENP3-EIF4A1A0A087X0R7 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC38.3■■■■□ 3.72
SENP3-EIF4A1A0A087X0R7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC38.28■■■■□ 3.72
SENP3-EIF4A1A0A087X0R7 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC38.28■■■■□ 3.72
SENP3-EIF4A1A0A087X0R7 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
SENP3-EIF4A1A0A087X0R7 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC38.24■■■■□ 3.71
SENP3-EIF4A1A0A087X0R7 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC38.23■■■■□ 3.71
SENP3-EIF4A1A0A087X0R7 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC38.2■■■■□ 3.71
SENP3-EIF4A1A0A087X0R7 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC38.2■■■■□ 3.7
SENP3-EIF4A1A0A087X0R7 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
SENP3-EIF4A1A0A087X0R7 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC38.18■■■■□ 3.7
SENP3-EIF4A1A0A087X0R7 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC38.15■■■■□ 3.7
SENP3-EIF4A1A0A087X0R7 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC38.15■■■■□ 3.7
SENP3-EIF4A1A0A087X0R7 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC38.13■■■■□ 3.69
SENP3-EIF4A1A0A087X0R7 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC38.13■■■■□ 3.69
SENP3-EIF4A1A0A087X0R7 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
SENP3-EIF4A1A0A087X0R7 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC38.11■■■■□ 3.69
SENP3-EIF4A1A0A087X0R7 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC38.11■■■■□ 3.69
SENP3-EIF4A1A0A087X0R7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC38.08■■■■□ 3.69
SENP3-EIF4A1A0A087X0R7 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC38.07■■■■□ 3.69
SENP3-EIF4A1A0A087X0R7 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC38.06■■■■□ 3.68
SENP3-EIF4A1A0A087X0R7 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC38.04■■■■□ 3.68
SENP3-EIF4A1A0A087X0R7 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC38.03■■■■□ 3.68
SENP3-EIF4A1A0A087X0R7 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC38.02■■■■□ 3.68
SENP3-EIF4A1A0A087X0R7 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC38.02■■■■□ 3.68
SENP3-EIF4A1A0A087X0R7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC38■■■■□ 3.67
SENP3-EIF4A1A0A087X0R7 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC38■■■■□ 3.67
SENP3-EIF4A1A0A087X0R7 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC37.97■■■■□ 3.67
SENP3-EIF4A1A0A087X0R7 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC37.97■■■■□ 3.67
SENP3-EIF4A1A0A087X0R7 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC37.97■■■■□ 3.67
SENP3-EIF4A1A0A087X0R7 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC37.96■■■■□ 3.67
SENP3-EIF4A1A0A087X0R7 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC37.95■■■■□ 3.67
SENP3-EIF4A1A0A087X0R7 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC37.87■■■■□ 3.65
SENP3-EIF4A1A0A087X0R7 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC37.86■■■■□ 3.65
SENP3-EIF4A1A0A087X0R7 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC37.86■■■■□ 3.65
SENP3-EIF4A1A0A087X0R7 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC37.85■■■■□ 3.65
SENP3-EIF4A1A0A087X0R7 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC37.85■■■■□ 3.65
SENP3-EIF4A1A0A087X0R7 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC37.85■■■■□ 3.65
SENP3-EIF4A1A0A087X0R7 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC37.82■■■■□ 3.65
SENP3-EIF4A1A0A087X0R7 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC37.82■■■■□ 3.65
SENP3-EIF4A1A0A087X0R7 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC37.78■■■■□ 3.64
SENP3-EIF4A1A0A087X0R7 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
SENP3-EIF4A1A0A087X0R7 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC37.75■■■■□ 3.63
SENP3-EIF4A1A0A087X0R7 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC37.74■■■■□ 3.63
SENP3-EIF4A1A0A087X0R7 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC37.74■■■■□ 3.63
SENP3-EIF4A1A0A087X0R7 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC37.74■■■■□ 3.63
SENP3-EIF4A1A0A087X0R7 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC37.73■■■■□ 3.63
SENP3-EIF4A1A0A087X0R7 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC37.73■■■■□ 3.63
SENP3-EIF4A1A0A087X0R7 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC37.73■■■■□ 3.63
SENP3-EIF4A1A0A087X0R7 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
SENP3-EIF4A1A0A087X0R7 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC37.72■■■■□ 3.63
SENP3-EIF4A1A0A087X0R7 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC37.72■■■■□ 3.63
SENP3-EIF4A1A0A087X0R7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC37.68■■■■□ 3.62
SENP3-EIF4A1A0A087X0R7 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC37.68■■■■□ 3.62
SENP3-EIF4A1A0A087X0R7 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
SENP3-EIF4A1A0A087X0R7 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC37.67■■■■□ 3.62
SENP3-EIF4A1A0A087X0R7 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC37.64■■■■□ 3.62
SENP3-EIF4A1A0A087X0R7 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC37.61■■■■□ 3.61
SENP3-EIF4A1A0A087X0R7 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC37.6■■■■□ 3.61
SENP3-EIF4A1A0A087X0R7 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC37.58■■■■□ 3.61
SENP3-EIF4A1A0A087X0R7 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC37.58■■■■□ 3.61
SENP3-EIF4A1A0A087X0R7 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC37.58■■■■□ 3.61
SENP3-EIF4A1A0A087X0R7 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC37.57■■■■□ 3.61
SENP3-EIF4A1A0A087X0R7 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC37.57■■■■□ 3.6
SENP3-EIF4A1A0A087X0R7 DYNLL1-208ENST00000550178 581 ntBASIC37.57■■■■□ 3.6
SENP3-EIF4A1A0A087X0R7 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC37.54■■■■□ 3.6
SENP3-EIF4A1A0A087X0R7 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC37.54■■■■□ 3.6
SENP3-EIF4A1A0A087X0R7 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC37.53■■■■□ 3.6
SENP3-EIF4A1A0A087X0R7 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC37.53■■■■□ 3.6
SENP3-EIF4A1A0A087X0R7 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC37.52■■■■□ 3.6
SENP3-EIF4A1A0A087X0R7 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC37.5■■■■□ 3.59
SENP3-EIF4A1A0A087X0R7 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC37.49■■■■□ 3.59
SENP3-EIF4A1A0A087X0R7 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC37.48■■■■□ 3.59
SENP3-EIF4A1A0A087X0R7 RPS2P35-201ENST00000443417 897 ntBASIC37.47■■■■□ 3.59
SENP3-EIF4A1A0A087X0R7 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC37.47■■■■□ 3.59
SENP3-EIF4A1A0A087X0R7 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
SENP3-EIF4A1A0A087X0R7 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
SENP3-EIF4A1A0A087X0R7 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC37.45■■■■□ 3.59
SENP3-EIF4A1A0A087X0R7 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC37.44■■■■□ 3.58
SENP3-EIF4A1A0A087X0R7 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC37.42■■■■□ 3.58
SENP3-EIF4A1A0A087X0R7 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC37.42■■■■□ 3.58
SENP3-EIF4A1A0A087X0R7 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC37.41■■■■□ 3.58
SENP3-EIF4A1A0A087X0R7 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC37.4■■■■□ 3.58
SENP3-EIF4A1A0A087X0R7 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC37.4■■■■□ 3.58
SENP3-EIF4A1A0A087X0R7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC37.39■■■■□ 3.58
SENP3-EIF4A1A0A087X0R7 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC37.39■■■■□ 3.58
SENP3-EIF4A1A0A087X0R7 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC37.37■■■■□ 3.57
SENP3-EIF4A1A0A087X0R7 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC37.35■■■■□ 3.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms